Results for "Filters"
Blogs
List of gene ontology software and tools
...rity-based scatterplots, interactive graphs, or tag clouds. http://revigo.irb.hr/ QuickGo (EMBL-EBI Institute) It uses extensive computational filters to allow the generation of sp...3730 days ago
Bookmarks
pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Com...2194 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...iltering k-mer hashes and FastQ/A files: kmer: Produces a k-mer hash containing only k-mers within specified coverage and GC tolerances. seq: Filters a sequence file based on whet...2002 days ago
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Pages
Awesome perl frameworks, libraries and software - PART 2
...i/libtext-tepl-runtime-perl - Text::Tepl::Runtime - Basic runtime filters for Text::Tepl theory/pod-si...mcnamara/pod-simple-wiki - A Perl Module for creating Pod to Wiki filters. jimdigriz/freeradius-oauth2...2515 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...The first pass identifies putative binding sites and compensates for variation in the mappability of sequences across the genome. The second pass filters out sites that are not signif...3540 days ago
Software packages for next gen sequence analysis
...The first pass identifies putative binding sites and compensates for variation in the mappability of sequences across the genome. The second pass filters out sites that are not signif...3263 days ago
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News
Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016
...customize pipelines and share them with other Strand NGS users. Finally, we will show a brief glimpse of an elaborate pipeline that aligns reads, filters poor-quality matches, compute...3033 days ago
- ...Center Abstract: Strand NGS supports a comprehensive and flexible RNA-Seq data analysis workflow consisting of Alignment, Quality Assessment, Filters, and a range of analysis and...
2504 days ago
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Bio-Scripts
- ...lit spots into individual reads Full Spot Filters Applied to t...emove adapter sequences from reads Common Filters Applied t...matepair distance on the same reference Filters for individual reads Ap...
2147 days ago
- ...pass quality thresholds and Illumina-specific filters. CollectQualityYieldMe...ns reads to the microbe reference PathSeqFilterSpark...erVcf (Picard) Hard filters a VCF. VariantFiltration...
2096 days ago
Tags
FiNGS: Filters for Next Generation Sequencing
Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their thresholds) Option to use filters identical to I...Tags: Filters, Next, Generation, Sequencing, FiNGS, NGS
1184 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
...by the results (poor coverage, for example), try to set simplification parameters manually (see section "Fine tuning"). By default, Sibelia filters out synteny blocks shorter th...1306 days ago
- ...sp; Apply samtools filters to alignment tracks captured...
1541 days ago
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