Results for "Finishing"
Blogs
Protocol for De novo Genome Assembly using Illumina Reads
...genomics/ingap and http://ingap.sourceforge.net/inGAP is also useful for finding structural variants between genomes from read mappings. Genome finishing tools:Semi-automated gap fill...1205 days ago
Bookmarks
- ...rtunities and pitfalls in the finishing process. While genomes can no...of lab work and thousands of finishing experiments and is usually do...shotgun assembly to guide the finishing process. A set of programs to...tasks can be found here: Finishing Scripts v1.0 (63 MB tar.gz fi...
2543 days ago
MIX: Combining multiple assemblies from NGS data
...nes two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm build...2190 days ago
- +1 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...st 12 years to get assembly jobs done efficiently – and especially accurately. That is, without actually putting too much manual work into finishing the assembly. HapCompass 0.7...2687 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...ysis to diagnose, report, and automatically improve de novo genome assemblies. Phred/Phrap/Consed 29.0 – DNA Sequence Assembler & Finishing Tools phrap is a program f...2687 days ago
Wire posts
Bio-Scripts
Install Python locally on shared Linux server !
...wing command to install pip as a local user wget --no-check-certificate https://bootstrap.pypa.io/get-pip.py -O - | python - --user #After finishing the installation, we need to...2099 days ago
Tags
- The process of finishing a genome and moving it from a draft stage (the result of sequencing and initial assembly) to a complete genome is typically a time and resource intensive task. The advent of new sequencing technologies has come with its own set of opportunities and pit...
Tags: Finishing, NGS, Scaffoldings
2543 days ago
- Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types Consed includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence in targeted regions. Consed is compatible wi...
Tags: Consed, Finishing, Package, BAM, Viewer, Assembly, Editor, Autofinish, Autoreport, Autoedit, Align, Reads, Reference, Sequence
1550 days ago
