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Computational Proteomics : Lets remember the basics
...the-Periodic-Table The eagle genomics group provide an element of bioinformatics in periodic tables. Yes you got it, this is not periodic table rather bioinformatics tools with periodicals ht...3479 days ago
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Bio++ : C Language libraries for your biological need
...ms for plotting trees, with support for vector formats like SVG, Fig or LaTeX-PGF.S...ally, Bio++ is a set of C++ libraries for Bioinformatics, including sequence analys...neous or not. Population genetics A new file format to deal with codominant marke...3939 days ago
Check the Size of a directory & Free disk space.
The amount of databases we bioinformatician deal are just HUGE &hellip...2 simple commands that most bioinformatician want to know when they s...on '-h' stands for human readable format. Therefore, in order to print...the '-h' indicates human readable format. Hence instead of kilobytes a...3694 days ago
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sf...they occupy less space in memory with maximum information content. Link for those w...ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=format#sff...3911 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...The Sequence Alignment/Map format and SAMtools. Li et al, Bioin...d set of reads. Salmela, Bioinformatics 26(10):1284, 2010. Full Te...profiling. Łabaj et al, Bioinformatics 27:i383 - i391, 2011 Full...-seq reads. Chong et al, Bioinformatics 28(21):2732-7, 2012. Publ...3771 days ago
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CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY
...ct Fellow First Class M.Sc./M.Tech in bioinformatics/Human Genetics/Genomics...ct Fellow First Class M.Sc./M.Tech in bioinformatics/Human Genetics/Genomics...below: 1. Sending the resume in MS Word format directly to hrd@igib.res.in (...3894 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the...e at the Tomato Disease Workshop 2010. For more information, please visit http://www.extension.org/pages/32521/bioinformatics-101-video.3888 days ago
Download genome using NCBI esearch command line !
..."CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch -format fasta > seq2.fa #fastANI f...1093 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1093 days ago
Bioinformatics Skill Development Program (BSDP)
...wo week short courses in bioinformatics, genomics, proteomics and...or a skilled and trained bioinformatics and computational biology...ormatics skills. For BSDP new format and series of exciting worksh...r more updates: training@bioinformaticsonline.com3699 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabular output format 6 Column headers:qseqid sseqid pident length mismatch gapopen qstart qend sstart send eva...Tags: BLASTn, blast, alignment, output, format, 6
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Comment on "A quick guide to Phred scaling"
...e base call. Quality score encoding: The Phred quality scores are typically encoded in the quality score field of the FASTQ file format, which is a common format used for storing sequencing r...407 days ago
Comment on "Short-read assembly using Spades !"
...the directory where the assembled genome will be saved, "forward_reads.fastq" and "reverse_reads.fastq" are the forward and reverse reads in FASTQ format. Evaluation of assembly:...407 days ago