Install Samtools, Bcftools and htslib on Ubuntu !
#Inspired from online search sudo apt-get update sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-dev sudo apt-get install zlib1g-dev sudo apt-ge...1555 days ago
Bash commandline to install Anaconda !
...-env-2.6.0-1 ... installing: blas-1.0-mkl ... installing: ca-certificates-2019.1.23-0 ... installing: intel-openmp-2019.3-199 ... installing: libgcc-ng-8.2.0-hdf63c60_1 ... ins...1552 days ago
Bash command to install Miniconda !
...ata_data/workshop/wsu29/miniconda3 added / updated specs: - _libgcc_mutex==0.1=main - asn1c...ibedit==3.1.20181209=hc058e9b_0 - libffi==3.2.1=hd88cf55_4 - libgcc-ng==9.1.0=hdf63c60_0 -...1552 days ago
Bash command to install bwa, samtools, picard !
...KB bwidget-1.9.11 | 1 113 KB gcc_impl_linux-64-7.3.0 | habb00fd_1 73.2 MB gcc_linux-64-7.3.0 |...1552 days ago
Bash command to install GATK, Bedtools and SnpEff !
...36h96ca727_0 3.8 MB r-mgcv-1.8_28 | r36...6h6115d3f_0 180 KB r-pkgconfig-2.0.2 | r36h...r-matrix-1.2_17-r36h96ca727_0 r-mgcv pkgs/r/linux-64:...###################### | 100% r-pkgconfig-2.0.2 | 25 KB | #...1552 days ago
Perl script to delete the adjacent repeats !
...ly the interview question for bioinfomatician ! #Write a code to delete the adjacent repeated character .... $string='ATTTTTTGGC'; # This should be converted to ATGC $string =~ s/(\w)\1/$1/g; p...1547 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...d.r-project.org/src/contrib/pkgconfig_2.0.3.tar.gz' Content t...nd MD5 sums checked ** libs gcc -std=gnu99 -I/usr/share/R/in...nd MD5 sums checked ** libs gcc -std=gnu99 -I/usr/share/R/in...URCE=2 -g -c has.c -o has.o gcc -std=gnu99 -I/usr/share/R/in...1547 days ago
Install Parrot Virtual Machine !
...at Configure.pl line 84. Deleting gcov-generated files Deleting c.......................skipped. auto::gcc - Is your C compil...nline....................no. auto::gc - Determine alloca...bug -w --warnings -G --no-gc -g --gc ms2|gms|ms|inf s...1534 days ago
Pack a perl program with their dependencies on Ubuntu !
...s analyzing codon usageBy Neelam Jha 130 days ago analyzingcodonusage perl script...implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using who...1508 days ago
Commands to install conda in Ubuntu !
...-env-2.6.0-1 ... installing: blas-1.0-mkl ... installing: ca-certificates-2019.1.23-0 ... installing: intel-openmp-2019.3-199 ... installing: libgcc-ng-8.2.0-hdf63c60_1 ... ins...1508 days ago