Computer simulation of genetic mechanism !!
...ckage simulating the evolution of copy number profiles along a tree. http://bit.ly/simcopy SIMLA SIMLA is a SIMuLAtion program that generates data sets of families for use...2984 days ago
BBTools for bioinformatician !
...xact number of bases with a each coverage level. You can also get per-base coverage or binned coverage if you want to plot the coverage. It also generates median and standard deviation...2279 days ago
3662 days ago
PhyloGrapher - Graph Visualization Tool
...sualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set...2959 days ago
Genome Assembly Tools and Software - PART2 !!
...etermined bases which has been proven to correlate with poor quality and multiple copy reads. It also enables to clean paired-ends sff files and generates on one side a sff with the va...2695 days ago
Awesome perl frameworks, libraries and software - PART 3
...user friendly way, preventing users from raw editing of configuration files. mackers/passook - Passook is a perl script that automatically generates passwords. Passook is customi...2503 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...imCopy An R package simulating the evolution of copy number profiles along a tree. http://bit.ly/simcopySIMLA SIMLA is a SIMuLAtion program that generates data sets of families for use...3746 days ago
List of In-silico Binding Site Prediction Tools
...s that share local structural similarities with the query protein and generates structure-based alignments of...www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html The SURFNET program generates surfaces and void regions bet...3753 days ago
3709 days ago
Perl script to Mutate a DNA Sequence
#!/usr/local/bin/perl -w # This script randomly mutates the DNA sequence and generates 10 successive mutation results. # While executing this script it asks for the file name of th...2925 days ago
Generating a random string with Perl
#!/usr/bin/perl # This function generates random strings of a given length sub generate_random_string { my $length_of_randomstring=shift;# the length of # the random strin...2916 days ago
mutatrix: a population genome simulator which generates simulated genomes.
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms More at https://github.com/ekg/mutatrix ./mutatrix -S sample -P test/ -p 2 -n 10 reference.fastaTags: mutatrix, population, genome, simulator, generates, simulated, genomes, ngs, test
1568 days ago
BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page for access to unlimited private notebooks, RNA-...Tags: BioJupies, Automatically, Generates, RNA-seq, Data, Analysis, Notebooks
1241 days ago
424 days ago
Comment on "Sibelia: A comparative genomics tool"
...in SAM format in the file "blocks_sequences.sam". "d3" visualization ------------------ File name = "d3_blocks_diagram.html". "Sibelia" generates an interactive html diagram t...1294 days ago