Comment on "Does anyone have Nanopore latest updates?"
Virus reveals Nanopore mechanism: http://www.nanowerk.com/nanotechnology-news/newsid=36061.php http://www.nature.com/ncomms/2014/140616/ncomms5171/full/ncomms5171.html3616 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
...mosomes/FASTA/http://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/Reference annotation downloadhttp://useast.ensembl.org/info/data/ftp/index.html3631 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
...h Quality): http://maq.sourceforge.net/maq-man.shtmlSOAP alignment tool: http://so...nment Tool: http://maq.sourceforge.net/bwa-man.shtmlBWA-SW (general purpose local...es.org): http://1001genomes.org/downloads/shore.htmlCloudBurst (Highly Sensitive S...3632 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
...It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.htmlHere is my version of the tuto...3633 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
NGS related research paper on Bioinformatics Journal @ http://www.oxfordjournals.org/our_journals/bioinformatics/nextgenerationsequencing.html3634 days ago
Comment on "Does anyone have Nanopore latest updates?"
...A 94025, Email: info@quantapore.com http://www.bizjournals.com/sanfrancisco/blog/biotech/2014/05/quantapore-dna-sequencing-ilmn-pacb-tmo.html?utm_source=feedburner&utm...3643 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html3647 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
Some of the useful Unix onliner http://genomics-array.blogspot.in/2010/11/some-unixperl-oneliners-for.html3673 days ago
Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Quality assesment of the reads, finding duplicates, trimming, string pattern searches [1] Biostrings – Reading sequences in R [2...3681 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...he reference using a q-gram filter. The mapping is visualized in a synteny plot. Find more at http://bibiserv.techfak.uni-bielefeld.de/cg-cat/r2cat.html3685 days ago