Results for "IDs"
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Understanding DUMP files from NCBI Taxonomy database !
...lash: -- newline (appear as "\n"), -- tab character ("\t"), -- double quotes ('\"'), -- backslash character ("\\"). taxid_list -- list of node ids separated by a single space661 days ago
Bookmarks
Download mutliple fasta file from NCBI in one GO!!
...s in single click given that you already have a list of GIs or accession IDs . Alternatively, use one lin...t;sequence.fasta where GIs.txt contains a list of GIs or accession IDs. (from :http://edwards.sdsu....3911 days ago
REVIGO: Reduced Visualize gene ontology
...d scatterplots, interactive graphs, or tag clouds. More about REViGO... | Please enter a list of Gene Ontology IDs below, each on its own line. The GO IDs may be followed by p-values o...2106 days ago
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Top-level pages
Apps for Busy Bioinformatics Researchers !!!
...ent project. This application is designed to allow you to search proteins on the go. Key features (Also in website): Search proteins by UniProt IDs, gene name or keywords Colle...3542 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ation, etc MutPred Description: web app tool; Classifies amino acids substituation as disease asso...ts for providing rich SNP annotations; “NCBI, Ensembl, and Uniprot IDs are provided for genes, trans...2909 days ago
Wire posts
News
National Workshop on Data Deluge in Biology: Use of High-Performance Grid & Cloud computing
...e look forward to a positive confirmation from you before December 10th, 2013. Confirmation mail need to be sent to the following three email-ids: Janaki Ch jana...3800 days ago
- ...to better accommodate nodes of different sizes Table Import Dialog (MacOS): fixed issue with table visibility Fixed bug where different molecules IDs in GenBank could resolve to t...
2866 days ago
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Opportunity posts
JRF Bioinformatics job position in University of Hyderabad
...ment clearly explaining how their skills are relevant to the above said position. The candidates should also enclose detailed CV and the name/Email IDs of three references Fellow...3051 days ago
Bio-Scripts
Perl script to extract lines with matching ids !!
#!/usr/bin/perl use strict; use warnings; my %patterns; #USAGE: perl extactByIds.pl Idsfile1 file2 > Result # Open file and get patterns to search for open(my $fh2,"2876 days ago
Perl script to extract fasta sequence by matching name/ids !!
...use warnings; use Text::Trim qw(trim); #Usage perl extractSeqbyID.pl ids.txt seq.fasta Result.fasta...ie; while () { chomp; next if /^\s*$/; s/>//g; my @ids=split (/\t/, $_); $selec...2876 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...tient and the reflection of these changes in some other selected body fluids will be revealed within the s...or more detailed information about the system the articles with the PMID IDs; PMID: 27378293 and PMID: 263...2363 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...ls. Blocks coordinates ------------------ File name = "blocks_coords.txt". First part of this file lists input sequences, their IDs, sizes and descriptions. IDs are just index numbers of seq...1286 days ago
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1493 days ago
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