Results for "IQ-TREE"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencies. Installing Perl modules manually by resolving all t...4130 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH...
4119 days ago
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Bookmarks
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10G...1319 days ago
- Chromosome number is a remarkably dynamic feature of eukaryotic evolution. Chromosome numbers can change by a duplication of the whole genome (a process termed polyploi...
3568 days ago
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Files
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes.
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes. No interchromosomal microchromosome fusions from the avian ancestor unless otherwi...2167 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that ca...4127 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby p...4127 days ago
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Top-level pages
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, statistical and computing methods that aim to solve bi...
4127 days ago
- Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an increasingly important tool to transform this data into in...
4126 days ago
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Wire posts
News
- PhylomeDB is a public database for complete collections of gene phylogenies (phylomes). It allows users to interactively explore the evolutionary history of g...
4098 days ago
Update Genome Workbench 2.7.15 released
NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence da...3900 days ago
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Opportunity posts
Protein function annotation and machine learning - UPMC - Paris, France
Protein function annotation and machine learning - UPMC - Paris, France Job Description: We are interested in finding an excellent postdoc with interests in protein...3744 days ago
2 positions on the evolutionary analysis of biological sequences in Montpellier - France
The Methods and Algorithms for Bioinformatics (MAB) team at the LIRMM (computer science, robotics and microelectronics laboratory at the CNRS & University of Montpe...3322 days ago
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ResearchLabs posts
- My main topics of interest are: The impact of non tree-like evolution such as horizontal gene transfers and hybridization on species biology Evolution and adaptatio...
1443 days ago
Video
- 006 - Phylogenetics Paul Andersen discusses the specifics of phylogenetics. The evolutionary relationships of organisms are discovered through both morphological and...
4088 days ago
Mathematics for Computing : Huffman Code (Tree Approach)
Determining a Huffman code for a discrete memoryless source, using the Huffman Tree algorithm4059 days ago
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Bio-Scripts
Converting from Windows-style to UNIX-style line endings with dos2unix
Lenovo-ideapad-320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for bioqueen: Reading package lists... Done Building dependency tree...1356 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bioqueen@bioqueen-Lenovo-ideapad-320-15ISK:~/Downloads/$ sudo apt install ./atom-a...1355 days ago
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Tags
IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likelihoods with similar computing time IQ-TREE found higher likelihoods between 62.2% and 87.1% of the studied alignments, thus effici...Tags: IQ-TREE, Efficient, software, phylogenomic, inference
2083 days ago
Comments
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Bioinformatics Journals Ranks from Google Scholar 1: Bioinformatics Journals (the most recent Impact Factor :: 5-year Impact Factor) WIREs Computational Molecular S...1284 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny program makes it possible to speed up the computations by over two times in comparison with SatsumaSynteny2, another popular tool. Such high efficiency was a...1590 days ago
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