Structural variation: the hidden genomic treasure
...jects have revealed substantial amounts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and short indels. Structural Variations (SVs)...2724 days ago
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Bioinformatics approach to Boar Taint
...ted from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previousy identified Q...3811 days ago
Commercial and public next-gen-seq (NGS) software
...s, clean and filter contigs, look for snps and indels., filter snps, do statistics...a fast and memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite...detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to...3540 days ago
Software packages for next gen sequence analysis
...a fast and memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite...eqMap - Supports up to 5 or more bp mismatches/INDELs. Highly tunable. Written by H...detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to...3264 days ago
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Visiting Scientist - Computational Genomics (two positions)
...eration sequencing DNA and RNA data Data mining and development of pipelines and troubleshooting Genome diversity analysis such as SNPs, Indels, Structural Variations, popul...3611 days ago
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Samtools commands for bioinformatician !
...ej.fasta sal_sej_sorted.bam.bam > sal_vars.bcf ### calling snp and indels # -c : find snp # -v : outp...e "bcftools" to see current version and commands ### calling snp and indels with no frequency threshold...1624 days ago