geck: trio-based comparative benchmarking of variant calls
...ing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenazim trio and the two independent Platinum Genome trios. We sho...1812 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
...d genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools. It makes intense use...1714 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...http://biodatageeks.org/sequila/ • Source code repository: https://github.com/ZSI-Bio/bdg-sequila • Operating system: Platform independent • Programming language:...1603 days ago
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies...1511 days ago
Applied Computational Genomics Course at UU: Spring 2020
...ional genomics research. The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct independent genomic analyses.1229 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
MitoZ, consisting of independent modules of de novo assembly, findMitoScaf (find Mitochondrial Scaffolds), annotation and visualization, that can generate mitogenome assembly togeth...886 days ago
793 days ago