Results for "Java."
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Skills: Java.2946 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencies. Installing Perl modules manually by resolving all...3971 days ago
Installing Bandage on Ubunty !
The following instructions successfully build Bandage (https://github.com/rrwick/Bandage ) on a fresh installation of Ubuntu 14.04: Ensure the package lists are up-...2210 days ago
Bookmarks
Taverna Workflow Management System
Taverna is an open source domain independent Workflow Management System – a suite of tools used to design and execute scientific workflows. Taverna has been crea...3936 days ago
Java and BioJava Tutorial links
BioJava provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of this bookmark is to provide useful links for bioinformatician. Please add more useful Java and BioJava links here ...3924 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput shor...2706 days ago
Awesome perl frameworks, libraries and software - PART 4
tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM perusio/nginx-munin - A set of plugins for monitoring nginx with Munin openresty/lua...2515 days ago
Top-level pages
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence data...3967 days ago
Useful Links for Bioinformaticians
...om http://www.devry-phx.edu http://www.ncsa.uiuc.edu http://www.w3.org/ http://archive.ncsa.uiuc.edu Java Tutorial java.sun.com/docs/books/tutorial/ developer.java.sun.com/developer/onlineTraini...3151 days ago
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Wire posts
News
BEReX : Biomedical Entity-Relation eXplorer
BEReX is a new biomedical knowledge integration, search, and exploration tool. BEReX integrates eight popular databases (STRING, DrugBank, KEGG, PharmGKB, BioGRID, GO,...3860 days ago
ArrayGen Next Generation Genome Browser Coming Soon !!!
The ANG genome browser is a visualization tool, developed by ArrayGen Technologies. This is a fast and an efficient genome browser, built with Javafx and Java swing. A...3097 days ago
Opportunity posts
Postdoctoral position in bioinformatics @ Sweden
Information about the department The Department of Mathematical Sciences at Chalmers University of Technology and the University of Gothenburg has about 170 faculty a...3969 days ago
Senior Bioinformatics Programmer and SRF at BIOTECH PARK Lucknow
BIOTECH PARK Advt. No. 3 (8)/BP/13 A walk-in-interview will be held in the Biotech Park Office at Sector G, Jankipuram, Kursi Road, Lucknow (U.P.) August 27, 201...3929 days ago
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Fun
- ...cause bioinformatician calmly whisper, “SSH” Why was the bioinformatician always so sleepy? A: He/She wasn’t given any Java. Why did the program/...
3201 days ago
Bio-Scripts
- ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250G --left /media/urbe/MyPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBGACXX.IND11_norib...
2148 days ago
- ...2.1/gatk-package-4.0.2.1-local.jar --help OpenJDK 64-Bit Server VM warning: Insufficient space for shared memory file: 13132 Try using the -Djava.io.tmpdir= option to select an...
2096 days ago
- +8 more Bio-Scripts
Groups
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for...3924 days ago
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Comments
Comment on "Mugsy: multiple whole genome alignment tool"
Set up the environment bash source /path/to/install/mugsyenv.sh Run mugsy mugsy --directory /data/output...1306 days ago
Comment on "FRODOCK 2.0: fast protein–protein docking server"
A web applet for browsing protein-protein interactions was implemented. It enables the display of interaction relationships, based upon neighboring distance and biological function. Availability: The Java applet is available at http://www.charite.de/bioinformatics1404 days ago
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