Results for "Key LigandScout"
Bio-Scripts
Perl script introduces control structures, arrays and hashes.
#!/usr/bin/env perl use strict; use warnings; my @first_array = ('DNA', 'ATGCGTGC', 5, 'RNA', 'AUGC');...); print $sequence{'DNA'}, "\n"; # Control Loop: foreach foreach my $key (sort (keys %seque...2871 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE F...elsif ($i == $j){ $DOT{xpos} = $i; $key = substr($seq, 0, $word); #treat Ns as mismatches unless ($key =~ m/N/...
2702 days ago
Calculate ATGC percentage in parallel with perl
#!/usr/bin/perl use strict; use Parallel::ForkManager; use Bio::SeqIO; #usage...my $id = $seqobj->display_id; # there's your key my $seq = $seqobj->seq;...} = $seq; } my $max_procs = 5; my @names = keys %seque...2665 days ago
Clump Finding Problem Solved with Perl
#Find patterns forming clumps in a string. #Given: A string Genome, and integers k, L, and t. #Re..."$km\t$myStr\n"; $myHash{$myStr}=$km; } #Print all key which have matching values foreach my $name (keys %myHas...2343 days ago
Perl script to read multi fasta sequence one by one
#!/usr/bin/env perl use strict; use warnings; #USAGE #perl rohanRun.pl seq.fa my $outfile='tmp.fa';...q_ref = readfasta ("$ARGV[0]"); my %fastaSeq = %$fastaSeq_ref; foreach my $key ( keys %fasta...2230 days ago
Perl script to convert GFF 2 FASTA !
#!/usr/bin/perl use strict; use warnings; use Bio::Seq; use Bio::SeqIO; use Bio::DB::Fasta; $| = 1; # Flush output my $outfile_cds = Bio::SeqIO->new( -format...2148 days ago
- #More at https://developer.nvidia.com/cuda-downloads?target_os=Linux&target_arch=x86_64&target_distro=Ubuntu&tar...uda-repo-ubuntu1804-10-2-local-10.2.89-440.33.01_1.0-1_amd64.deb $ sudo apt-key add /va...
1562 days ago
Installing docker for Bioinformatics on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine d.../download.docker.com/linux/ubuntu/gpg" | apt-key add -qq - >/dev/null Warning: apt-key output should not be parsed (...lt "/home/jit/.docker/cert.pem") --tlskey string...1523 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloa...th April 2019. Official Question Paper & Answer key of DBT-BET 2019 Exam has...BT-BET Exam is both the question paper & answer key is rele...1521 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$...on for client/server applications by using secret-key cryptography. cryptography...ling: ipython-7.4.0-py37h39e3cac_0 ... installing: keyring-18....1521 days ago
