Results for "Lib"
Bio-Scripts
To convert just one specific read group to fastq
...rate BAM file for each SAMPLE. cat selected.txt | parallel "picard FastqToSam F1=reads/{}_1.fastq F2=reads/{}_1.fastq O=bam/{}.bam RG=GROUP-{} LB=LIB-{} SM=SAMPLE_{} QUIET=true 2>...1540 days ago
Commands to install conda in Ubuntu !
...ins re-distributable, run-time, shared -library files from the Intel(TM) Math Kernel Library ("MKL binaries"). You are...ptography. cryptography A Python library which exposes cryptograph...z-1.8.8-hffaf4a1_0 ... installing: html5lib-1.0.1-py37_0 ... installing:...1509 days ago
- ...-get install --yes build-essential gcc-multilib perl ---> Using cache -...et install -y bioperl && apt-get install -y libstatistics-distributions-perl...me: jit-HP-Pro-3335-MTL Docker Root Dir: /var/lib/docker Debug Mode: false...
1507 days ago
- ...--yes git && apt-get install -y wget ---> Using cache ---> 646453255081 Step 6/16 : RUN apt-get install --yes build-essential gcc-multilib perl ---> Using cache -...
1440 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen...
1214 days ago
- ...ipy>=1.2 in /home/urbe/.local/lib/python3.6/site-packages (from...x>=1.5.2 in /home/urbe/.local/lib/python3.6/site-packages (from...z>=2011k in /home/urbe/.local/lib/python3.6/site-packages (from...threadpoolctl, MarkupSafe, joblib, scikit-learn, PyYAML, python...
1206 days ago
Set up WGD environment using conda !
...le mafft prank paml fasttree cmake libpng mpi=1.0=mpich Collecting...16 in /home/urbe/anaconda3/envs/wgd/lib/python3.7/site-packages (from...6_64.whl (27 kB) Collecting matplotlib>=3.0.2 Downloading matplot...pillow, MarkupSafe, kiwisolver, joblib, cycler, tornado, scikit-lear...1202 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking...iles/alignment.dir/NWAligner.cpp.o [ 13%] Linking CXX static library libbmp.a [ 13%] Built ta...1202 days ago
- ...-0.0 icu-devtools intltool jq libalgorithm-merge-perl libarchive-cpio-perl libasan4 lib.../ubuntu bionic/universe amd64 libonig4 amd64 6.7.0-1 [119 kB]....com/ubuntu bionic/main amd64 libmail-sendmail-perl all 0.80-1...u3.1_amd64.deb ... Unpacking libicu-dev (60.2-3ubuntu3.1) ......
1053 days ago
Installing Covid19 Environment !
...############### | 100% xorg-libxext-1.3.4 | 54 KB | ###...############### | 100% xorg-libxdmcp-1.1.3 | 19 KB | ###...#################### | 100% liblapack-3.9.0 | 12 KB...#################### | 100% libsanitizer-9.4.0 | 6.9 MB...922 days ago
