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Results for "Linux Server"

Bio-Scripts

• • Shruti Paniwala@shruti

  

  Install kraken on linux

  $ conda install -c bioconda kraken Collecting package metadata (repodata...LED: jellyfish bioconda/linux-64::jellyfish-1.1.12-h6bb024c_1 kraken bioconda/linux-64::kraken-1.1-h470a237_2...LED: kraken-all bioconda/linux-...

  1460 days ago

• • Jit@jit.aber

  

  Install quast using conda !

  (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer versio...

  1214 days ago

• • Jit@jit.aber

  

  Install SibeliaZ in your Linux cluster !

  (jitenv) jitendra@Bathymodiolus:~$ conda install -c bioconda sibeliaz Collecting packa...ill be INSTALLED: _anaconda_depends pkgs/main/linux-64::_anaconda_depends-2019.10-py27_0 maf2synteny bioconda/linux-...

  1231 days ago

• • Jit@jit.aber

  

  Install fastqc using conda !

  (JitMetaENV) ➜ JitMeta conda install -c bioconda fastqc Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1215 days ago

• • Jit@jit.aber

  

  Install spades using conda !

  (JitMetaENV) ➜ fastQC_out conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1215 days ago

• • Jit@jit.aber

  

  Install assembly-stats with conda !

  (JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1214 days ago

• • Jit@jit.aber

  

  Install Kraken2 using conda !

  (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve...

  1214 days ago

• • Jit@jit.aber

  

  Install prokka using conda !

  (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen so...

  1214 days ago

• • Jit@jit.aber

  

  Install seqtk using conda !

  (JitMetaENV) ➜ META_PE conda install -c bioconda seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1213 days ago

• • Jit@jit.aber

  

  Install bwa using conda !

  (JitMetaENV) ➜ assembly conda install -c bioconda bwa Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1213 days ago

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