Results for "MD"
Bio-Scripts
Installing docker for Bioinformatics on Ubuntu !
...ot be parsed (stdout is not a terminal) + sudo -E sh -c echo "deb [arch=amd64] https://download.docker.co...Built: Wed Mar 11 01:25:46 2020 OS/Arch: linux/amd64 Experimental: false...1512 days ago
Pack a perl program with their dependencies on Ubuntu !
...://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libgetopt-argvfile-perl all...://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libmodule-scandeps-perl all...ring to unpack .../5-libpar-packer-perl_1.041-2_amd64.deb ... Unpacking libpar-p...1510 days ago
Commands to install conda in Ubuntu !
...well as a full-stren gth general purpose cryptography library. pycrypto A collection of both secure hash functions (such as SHA256 and RIPEMD160), a nd various encryption...1510 days ago
Commands to install Statistics::R module in Ubuntu !
...nue? [Y/n] Y\ Get:1 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 r-base all 3.4.4-1ubuntu1 [9,312 B] Get:2 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libstatistics-r-perl all 0....1510 days ago
Python script to check sequence length in multifasta file
#!/usr/bin/python from Bio import SeqIO import sys cmdargs = str(sys.argv) for seq_record in SeqIO.parse(str(sys.argv[1]), "fasta"): output_line = '%s\t%i' % \ (seq_record.id, len(seq_record)) print(output_line)1214 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 -...
1440 days ago
- (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...
1214 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer vers...
1214 days ago
Set up WGD environment using conda !
...gs to (optional) --version Print version number -h, --help Show this message and exit. Commands: dmd All-vs.-all diamond blastp +...1202 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...archives. After this operation, 1,267 kB of additional disk space will be used. Get:1 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 dos2unix amd64 7.3.4-3 [351 kB] Fetched 3...1175 days ago
