Results for "ML"
Bio-Scripts
(JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...1230 days ago
- ...NING: A newer version of conda exists. 2.13.1-h7e3eb15_1002 icu 68.1-h58526e2_0 --> 67.1-he1b5a44_0 libxml2...
1230 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen...
1230 days ago
- ...ng python_utils-2.4.0-py2.py3-none-any.whl (12 kB) Collecting PyYAML>=3.10 Downloading PyYAML-5.3.1.tar.gz (269 kB) |...cation. Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 PyYAML-5.3.1 biopython-1.78 bokeh-1....
1222 days ago
Set up WGD environment using conda !
...tware #BLAST #MCL #MUSCLE/MAFFT/PRANK #PAML #PhyML/FastTree #i-ADHoRe #Creat...████████████| 510 kB 38.1 MB/s Collecting PyYAML>=3.10 Using cached PyYAML-...for collected packages: wgd, bokeh, ete3, PyYAML, sklearn Building wheel fo...1218 days ago
Command to create conda environment !
# using pip pip install -r requirements.txt # using Conda conda create --name --file requirements.txt #Using yaml conda env create -f environment.yml #Listing env conda env list #Create env with python36 conda create -n myenv python=3.61215 days ago
Steps to install Conda on Linux !
Download the installer: Miniconda installer for Linux. ( https://docs.conda.io/en/latest/miniconda.html#linux-installers ) Anaconda installer for Linux. ( https://www.anaconda.c...1197 days ago
Python script to download covid genome !
...cly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import requests import yaml seqs = yaml.load(requests.get("https://ww...1151 days ago
- ...ran-spatial r-cran-survival r-doc-html r-recommended scour zlib1g-de...info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-ba...buntu bionic/universe amd64 r-doc-html all 3.4.4-1ubuntu1 [527 kB]...eviously unselected package r-doc-html. Preparing to unpack .../104...
1069 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1069 days ago
