Results for "Maps"
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...omosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome vi...1948 days ago
Leaflet: JavaScript libraries for interactive maps
...JavaScript libraries for interactive maps. Features Interactive panning/zooming Compose maps using arbitrary combinations...s Lines Popups GeoJSON Create maps right from the R console or R...events to drive Shiny logic Display maps in non spherical mercator pro...1544 days ago
Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo: https://vgteam.github.io/sequenceTubeMap/1514 days ago
- Chromonomer is a program designed to integrate a genome assembly with a genetic map. Chromonomer tries very hard to identify and remove markers that are out of order i...
1537 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with conda: cond...1502 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
Whole-genome homology maps attempt to identify the evolutionary relationshi...n each genome and hypothetical ancestral genome. Maps listing these relationships a...led Mercator that constructs orthology maps between multiple whole genome...1445 days ago
gggenes: a ggplot2 extension for drawing gene arrow maps.
Install the stable version of gggenes from CRAN: install.packages("gggenes") If you want the development version, install it from GitHub: devtools::install_github("wilkox/gggenes") More at https://github.com/wilkox/gggenes1431 days ago
Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies
Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which requir...1402 days ago
Liftoff: An accurate GFF3/GTF lift over pipeline
Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a...1230 days ago
OGDRAW - Draw Organelle Genome Maps
...ons in the GenBank or EMBL/ENA format into graphical maps. The input has to be a G...s of files. The application is optimized to create detailed high-quality maps of organellar genomes (plasti...941 days ago
