Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing. Each co.../projects/phusion2/files/smis/ List of assemblers for Oxford Nanopore MinION long reads LQSDALIGNER, Cele...2312 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very...3217 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
...ved. A new generation of sequencers offering substantially longer reads is emerging, notably the Pacific Biosciences (PacBio) RS II system and the MinION system, released in early 201...3217 days ago
Does anyone have Nanopore latest updates?
...hnologies® is developing the GridION™ system and miniaturised MinION™ device. These are a ne...ps://www.nanoporetech.com/ https://www.nanoporetech.com/technology/the-minion-device-a-miniaturised-sensing...3805 days ago
Genome Assembly Tools and Software - PART1 !!
...e assembly from long gapless reads, like those produced by SMRT sequencing technologies (PacBio RS II) and Oxford Nanopore flow cell technologies (MinION). REAGO 1.1 – REco...2678 days ago
Awesome perl frameworks, libraries and software - PART 1
...sible gene isoforms miyagawa/web-scraper - Perl web scraping toolkit semifor/Net-Twitter - A Perl interface to the Twitter APIs kraih/minion - Perl job queue f...2481 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3189 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer. It includes a functions to generate a number plots for examining the statistics that we think will be useful for this task. However, nanopore sequencing is an emergi...Tags: tools, quality, assessment, Oxford, Nanopore, MinION, sequencer, IONiseR, R
2347 days ago
MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than most other things out there: it takes about a minute to analyse a 4GB flo...Tags: MinION_GC, R, script, QC, MinION, data
2337 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1942 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...p;First off, let’s extract the 2D sequence data as FASTQ from the MinION data. Nick’s SQK-...oRe_scripts/old_format/extract2D MAP006-1/MAP006-1_downloads/pass/ > minion.pass.2D.fastq &2166 days ago