LRSDAY: Long-read Sequencing Data Analysis for Yeasts
...uencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome si...1728 days ago
modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the exp...ation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a...l and global explanations. Tools for model exploration unite with tools...1579 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
...s (SNVs), multinucleotide variants (MNVs), insertion/deletion variants (indels), and structural variants (SVs) simultaneously with a single simple model. More at https://...1574 days ago
1542 days ago
DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution
DeepHiC is a GAN-based model for enhancing Hi-C data resolution. We developed this server for helping...g could be performed according to our published code. We provided trained models for various depth of low-cov...1539 days ago
1433 days ago
ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes
ShadowCaster implements an evolutionary model to calculate Bayesian likelihoods for each ‘alien genes’ with an unusual sequence composition according to the host genome b...1406 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
...suggested in [McMurdie and Holmes 2014] and [Jonsson2016]. SHAMAN robustly identifies the differential abundant genera with the Generalized Linear Model implemented in DESeq2 [Love 2...1372 days ago
pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally direc...1344 days ago
1301 days ago