Results for "Modules"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...need to install several perl modules and dependencies. Installing Perl modules manually by resolving all the...dependencies. Typically, Perl modules will be dependent on several...file removed. Install Perl Modules using CPAN Hey smile pleas...3944 days ago
- ...else. Following are the steps to install GD modules in Mac OS1. SetupCreate a fol...om/PPMPackages/5.6plus/MSW.BTW,All Perl 5.6.1 Modules are located at:http://ppm.Act...sonline.com/blog/view/710/how-to-install-perl-modules-manually-using-cpan-command-a...
3934 days ago
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Bookmarks
- The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation...
3410 days ago
RNA-Seq De novo Assembly Using Trinity
...novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and But...2959 days ago
- +32 more Bookmarks
Discussion topics
- ...found that Strawberry comes with additional dev tools to compile CPAN modules if necessary. Whereas ActivePerl has a lot of prepackaged modules which are easier to install w...
3910 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...SAM/BAM format / RNA-Seq Assembly and Analysis SAMMate is an open source GUI software suite to process RNA-Seq data. It is composed of two modules: assemblySAM and SAMMate. as...2680 days ago
Awesome perl frameworks, libraries and software - PART 2
...in core perl, i.e require no modules that don't already come with...ber-lc - Perl and Python modules for normalizing Library of Co...ian-Apt-PM - locate Perl Modules in Debian repositories jjn10...gbarr/perl-IO - Perl IO modules -- THESE MODULES ARE NO LONGE...2488 days ago
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Top-level pages
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the extent...3937 days ago
Commercial and public next-gen-seq (NGS) software
...alignments based on k-mer seeds. http://bibiserv.techfak.uni-bielefeld.de/swift/biolib.is library and a set of script targeted to NGS. There are modules to: clean sequences (sanger,...3513 days ago
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Wire posts
News
- ...challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. To do so, deepTools contains useful modules to process the mapped reads d...
3460 days ago
SCFBio have developed Sanjeevini
...or "Sanjeevini-SCFBIO-CADD" in Google play store. It contains all modules used by current Sanjeevini us...aborating groups stay in touch with each other.The module contains all modules of Sanjeevini suite of softwa...2355 days ago
ResearchLabs posts
- ...b work focuses on improving annotation of non-protein-coding regions of the genome including conserved noncoding sequences (CNSs), cis-regulatory modules (CRMs), transcription factor...
3861 days ago
Bio-Scripts
- ...U MUST CHANGE THE LINE ABOVE TO POINT TO # THE FULL PATH OF THE PERL EXECUTABLE ON YOUR SYSTEM. # System requirements: requires perl and perl modules # DB_File and GD.pm, availab...
2687 days ago
- ...Collect multiple classes of metrics. CollectMultipleMetricsSpark (BETA Tool) Runs multiple metrics collection modules for a given alignment file...
2069 days ago
- +9 more Bio-Scripts
Tags
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analysis in R. It contains many speed and memory effective string con...Tags: Bioinformatics, Computational Biology, NGS, R, Bioconductor, Packages, Modules, Next generation sequencing
3619 days ago
Comments
Comment on "Benchmarking Perl Module !"
...these results to compare the performance of your Perl module to other modules or to previous versions of yo...hmark module, such as cmpthese, to compare the performance of multiple modules or subroutines. In summa...410 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
Using KAT again (You will need the modules: KAT/2.1.1 and gnuplot/4.6.5) – we can plot the kmer content of the assembly compared to the kmer content of the read s...1331 days ago
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