LoRMA: A tool for correcting sequencing errors in long reads
...with increasing length of k-mers, and second, the corrected reads are further polished using long-distance dependencies that are found using multiple alignments. According to our...2079 days ago
LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
...eads the size of which can be set by --long_read_batch_size N. Better compressed intermediate files. Added utilities folder. Added support for multiple short read files. Removed us...2079 days ago
2058 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
...ing IDs or sequences, and generates annotations for each gene based on multiple databases about pathways, dis...r a probability of enrichment and enrichment score based on results of multiple methods.2037 days ago
RopeBWT2: Incremental construction of FM-index for DNA sequences
RopeBWT2 is an tool for constructing the FM-index for a collection of DNA sequences. It works by incrementally inserting one or multiple sequences into an existing pseudo-BWT position...2031 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
...e quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or differ...2011 days ago
BamView: a free interactive display of read alignments in BAM data files
...command line BamView will prompt for a file to be entered. The BAM index file should have the same name as the BAM file but with a '.bai' suffix. Multiple BAM files can be loaded and o...2015 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucle...2011 days ago
KEGG Mapper – Reconstruct Pathway
...PATHWAY mapping tool that assists genome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms) annotated with KEG...1982 days ago
EGAD: Ultra-fast functional analysis of gene networks
...onal groups to be accomplished in minutes in cross-validation and an analytic determination of the optimal prior to guess candidates genes across multiple functional sets (calculate_mu...1981 days ago