How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl mod...- Biopython support for the BioSQL database schemalibbtlib-perl - library for basic sequence m...4096 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of...of the newbie bioinformaticians are faced with dilemma when they receive biological sequence d...3853 days ago
4090 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found...1292 days ago
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex...apped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment...3935 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl4013 days ago
4066 days ago
Bio++ : C Language libraries for your biological need
....Consensus sequences.Pairwise alignment.Similarity score computation....ewick files, with support for multiple entries. Phylogenetic reconstu...ives computation.Optimization algorithms: Golden section search, Brent...B. Non-homogeneous models of sequence evolution in the Bio++ suite of...4093 days ago
4093 days ago
4093 days ago
4092 days ago
100K Foodborne Pathogen Genome Project
The 100K Genome Project, led by the University of California, Davis, the U.S. Food and Drug A...announced that it has added 20 newly completed genome sequences...otechnology Information. 100K Genome Project, aims to sequence t...4069 days ago
Prime Minister’s 100k Genome Project
Genomics Ebgland is destined to sequence 100,000 patients over the next five year in England. A landmark project by british government. Genomics England will play a...4069 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories...ystems it will be critical to establish a link between sequence...ms including structural variants, of the comparison of multiple a...4094 days ago
4094 days ago
4094 days ago
4094 days ago
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names.... Har Ligand jo dock karega. Alignment to hona hi tha. Mera sequence mera base. Markov aapke hai...ya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BLAST To Hona...iya Hai GeneScan Karke Dekho Alignment Apna Sequence P...4064 days ago
4054 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Dat...will require not only faster computers; it will require smarter algorithms. We show how ideas from cutting-edge algorithms, including spectral graph the...4048 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -qu...| efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda inst...seq2.fa --visualize -o fastani.out #Plot using sequences...1247 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #...1247 days ago
4089 days ago
4066 days ago
Introduction to Bioinformatics - Week 8 - Lecture 1
Middle East Technical University OpenCourseWare [ http://ocw.metu.edu.tr ] Course Title: Introduction to Bioinformatics Lecture Title: Multiple Sequence Alignment Algorithms Instructor: Assoc. Prof. Tolga CAN For Lecture Notes: http://ocw.metu.edu.tr/course/view.php?id=37Tags: Bioinformatics Algorithms, Multiple Sequence Alignment Algorithms
4043 days ago