npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...such as gene ordering and the detection of genes from mobile elements (plasmids and genomic islands). Complete paper at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321748/...2550 days ago
2544 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262533 days ago
2516 days ago
2498 days ago
1394 days ago
2332 days ago
HTTDB - Horizontally transferred transposable elements database
...nown as endogenization events which is characterized by the stable integration a viral genomic fragment into the host genome. https://www.ncbi.nlm.nih.gov/pubmed/293153582305 days ago
Carefully opt for human reference genome
...ressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to GRCh38 or hg38, use the following: ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/4...1549 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecular clock models. This i...2175 days ago