Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Journal of Integrative Bioinformatics https://www.degruyter.com/view/journals/jib/jib-overview.xml?tab_body=overview1237 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/1259 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
Funding opportunities for PhD and postdocs in India https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf1269 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
Useful books for Indian scholarships https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf1269 days ago
Comment on "URMAP, an ultra-fast read mapper"
...put is specified by -samout. Use /dev/stdout or "-" (minus sign) if you want to pipe output to another pro...cores or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3...1298 days ago
Comment on "Sibelia: A comparative genomics tool"
...elicobacter_pylori.fasta Synteny blocks are visualized with...part of the file describes synteny blocks in sections separat...-------- You can visualize synteny blocks with a colorful cir...pbau.ru/sites/default/files/SyntenyFinder.pdf 2. Max A. Aleks...1300 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
Set up the environment bash source /path/to/install/mugsyenv.sh R...sa). Header lines in the FASTA files should not contain ':' or '-' to avoid parsin...output The output of Mugsy is Multiple Alignment Format (MAF).One option for b...1301 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...p;gnuplot/4.6.5) – we can plot the kmer content of the assembly compared to t...l now use kat comp to create a kmer content comparison. Use kat c...png file that was produced. Does the kmer content look good to you? How muc...1352 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...program will also break up contigs/scaffolds at spurious site...Reapr is a bit fuzzy with contig names, but luckily it&rsquo...the contig names. If you run into any problems, run reapr...am. This should take about twenty minutes. Finally we can use...1352 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1357 days ago