1550 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural adv...1543 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads ag...1445 days ago
RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
...quencing data types: single-end/paired-end bulk RNA-seq (strand-specific/agnostic) paired-end single-cell RNA-seq (strand-specific/agnostic) nanopore RNA-seq (PCR cDNA/direct cDNA...1393 days ago
247 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
...d reduced frameshift errors when applied to human and nonhuman assemblies built from Pacific Biosciences HiFi and continuous long reads or Oxford Nanopore reads, including the first co...760 days ago
666 days ago
CLAW: Chloroplast Long-read Assembly Workflow
...orkflow for the assembly of chloroplast genomes. CLAW uses chloroplast long-reads, which are baited out of larger read libraries (e.g., an Oxford Nanopore Technologies MinION read libr...71 days ago