Results for "Next Generation Sequence Analysis"
Users
Skills: Next Generation Sequence Analysis2715 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencies....ython support for the BioSQL database schemalibbtlib-perl - library for basic sequence...3944 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to anal...abbit hole and possibly never getting a solution. Learn to perform root cause analysis, learn enough about the under...3944 days ago
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Bookmarks
- I bet, this website will be your best friend in near future. This helps us to explore...from it. You can find some useful open source bioinformatics codes for your analysis work. You can use the left ba...
3909 days ago
Rdatamining.com : R and Data Mining
This website presents examples, documents and resources on data mining with R. Documen...for Data Mining, R and Data Mining: Examples and Case Studies and Time Series Analysis and Mining with R.3909 days ago
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Files
- Bioinformatician life is interconnected, they always dream for a powerful server, little more space on server as they are generating lots of data per run, dream to publish results in good impact journals, meetings reminders :) and research analysis off course!!!
3903 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3861 days ago
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Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™...ystem and miniaturised MinION™ device. These are a new generation of electronic molecular analysis system for use in scientific...3807 days ago
- The key to finding a solution is to notice that most genomicsequences differ by very little. It may...t the number of complete genome sequences being stored is increasing r...l. In other words, a single DNA sequence isn't particularly compressib...s/181-algorithms/4537-a-new-dna-sequence...
3913 days ago
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Pages
Bio++ : C Language libraries for your biological need
...for Bioinformatics, including sequence analysis,phylogenetics, molecular evol...the libraries are as follows:Sequence analysis Sequence and Site objects, w...B. Non-homogeneous models of sequence evolution in the Bio++ suite...of C++ libraries for sequence analysis, phylogenetics, molecular evo...3941 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing,...3941 days ago
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Top-level pages
- ...ing, so called the “high-throughput next generation sequencing” (HT-N...s, the main challenge is to cope with the analysis of vast production of sequencin...to handle ever growing genome or protein sequences. The next step after reading genetic code i...
3941 days ago
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The...to provide raw data for later analysis. Once the raw data are availa...tein interactions. Analysing sequence data: The primary data of se...
3941 days ago
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Wire posts
News
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Science mee...iscuss the current and future state of all aspects and applications of Next Generati...3912 days ago
100K Foodborne Pathogen Genome Project
The 100K Genome Project, led by the University of California, Davis, the U.S. Food and Dr...ounced that it has added 20 newly completed genome sequences of foodborne disease-causing...hnology Information. 100K Genome Project, aims to sequence...3917 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the context of a flagship...e critical to establish a link between sequence variation, functional variati...l facilities and expertise in NGS data analysis, and will benefit as well fro...3942 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented kno...a prerequisite for this position. Experience with high throughput sequencing analysis methods, machine learning, pr...
3942 days ago
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ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our lo..., with an emphasis on mitosis. We develop in-vitro assays, quantitative image analysis and cytosim, a computer simul...
3942 days ago
- Melanie Bahlo is an applied statistician working in the areas of statistical genetics,...pedigrees Investigation of DNA sharing in distantly related individuals CNV analysis in pedigrees and connections...
3941 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will b...ga. Alignment to hona hi tha. Mera sequence mera base. Markov aapke hai...mil gaya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BLAST To Hon...GeneScan Karke Dekho Alignment Apna Sequence...3912 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3902 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data A...will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from...3896 days ago
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Bio-Scripts
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1095 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->...2909 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a progr...basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Wh...3524 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3520 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the facu...ome, proteome, and metabolome analysis to reveal the molecular p...seful tools for comprehensive analysis and comparison of high-throughp...retired, what would you tell next generation bioinformaticians? Bio...2355 days ago
Groups
R is a free software programming language and a software en...iners for developing statistical software and data analysis. R's popularity has increased...ical packages. Bioconductor provides tools for the analysis and comprehension of high-thr...3944 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of t...3901 days ago
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Tags
Skills: Bioinformatics, Next Generation Sequence Analysis, Genomics, Database Development, Perl, PHP, MySQL, Python
2715 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
...arameters set can be used for analysis of distantly-related geno...r exactly once in each input sequence, such blocks are used as input...diagram is more suitable for analysis. Please note that sequences that do not contain any syn...enyFinder: A Synteny Blocks Generation and Genome Comparison Tool"...1278 days ago
- ...tools for quality control and analysis of high-throughput sequence data. HTSeq HTSeq.The Pyt...r the quality control (QC) of next generation sequencing (NGS) data. The...to filter, reformat and trim next-generation sequence data. It is partic...
2131 days ago
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