Results for "Next Generation Sequencing (NGS) Conference"
Bio-Scripts
(JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1218 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use s...mum fitness for survival my $generation_count = 100000; # run for this many generations my $generation = 0;...hild is now a part of the new generation } return \@new_population...2372 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./f...Control program execution environment report generation...
2127 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadinsti...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g. adapte...Collect whole genome seque...cted allele fractions in pooled sequencing...
2076 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ format) from...stq-dump is in the SRA toolkit. It allows directly downloading data from a particular sequencing...1560 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJE...1543 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoCon...SvABA is a method for detecting structural variants in seque...o-transfer (HGcoT) between bacteria using whole-genome sequencing...1512 days ago
- Use pen and paper the assemble it. If you are brave enough, you can try to assemble this...TTTCAGAT AGCCGGACCT TATGATCATT TCATTAGGCG AGGCGGAGCT HINT: There is NO sequencing...
1216 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1055 days ago
Install Varscan on Ubuntu / Linux !
#Varscan is a java program designed to call variants in sequencing data. It was developed at the Genome Institute at Washington University and is hosted on github. To use Varscan we s...824 days ago
