Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for neutral markers (e.g. SNPs) and loci under selection (...2775 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based...h accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale problems such...2647 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archa...in-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, con...2548 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
...rver for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and RandomForest-based predic....S. (2014) Prediction and classification of ncRNAs using structural informationB...2486 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of ort...paring human GENCODE genes (from GENCODE v30) to lncRNAs from other species identified...Assembly Code Transcriptome lncRNAs Protein-coding...851 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...ve the completeness of both protein-coding and non-coding genes. After this tool was ap...ures of both protein-coding genes and circular RNAs were almost completely recove...especially for long proteins and long circular RNAs.2156 days ago
bpRNA: large-scale automated annotation and analysis of RNA secondary structure
bpRNA, a novel annotation tool capable of parsing RNA structures, including complex pseudoknot-containing RNAs, to yield an objective, preci...2176 days ago
2176 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Il...2069 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or comple...2048 days ago