Results for "Nucleotide"
Blogs
Computer simulation of genetic mechanism !!
...d-in-time population genetic simulations. http://www.patrickmeirmans.com/software/marlin.html Mason A package for the simulation of nucleotide data. http://www.seqan.de/pro...2973 days ago
Structural variation: the hidden genomic treasure
...unts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and shor...pipeline for annotation, classification and analysis of SVs at single nucleotide resolution.2010 PEMera compu...2701 days ago
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Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets...1144 days ago
- The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writ...
3414 days ago
- +40 more Bookmarks
Files
- Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
3864 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ly aligns TranscriptSimulator reads to their nucleotide templates using read title in...s “primer”, to recursively blast nucleotide databases in an attempt to ob...and a direct comparision of trace date with nucleotide data is possible. It also all...2684 days ago
Top-level pages
- ...pretation of various types of data including nucleotide and amino acid sequences, pro...dash;protein interactions; analysing single nucleotide polymorphisms to hunt for gen...n more detail on the structure level. Single Nucleotide Polymorphisms can be mapped o...
3945 days ago
List of bioinformatics open source projects/software.
...ary protein structure given assigned Residual Dipolar Coupling data SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Staden P...3755 days ago
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Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
...CSC, CSIRO, and the USDA as part of the International Sheep Genomics Consortium. It features over 54,241 evenly spaced probes that target single nucleotide polymorphisms (SNPs). More th...3895 days ago
- GenXPro GMbH is service provider for entire spectrum of nucleotide-based information of any biological sample. By combining intelligent data reduction techniques and late...
3634 days ago
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Opportunity posts
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
...iling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on the whole transcriptome level with a nucleotide precision. The technology all...3914 days ago
Postdoctoral Position (Bioinformatics/Computational Biology)
...iling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on the whole transcriptome level with a nucleotide precision. The technology all...3795 days ago
ResearchLabs posts
- Computer Aided Protein Structure Prediction; Identification of Vaccine Candidates (T-Epitope prediction); Analysis of Nucleotide/Protein Sequences; Development of Web Server/ Softwa...
3883 days ago
Bio-Scripts
Python script to download covid genome !
...if 'gene-region' in x and x['gene-region'] == "complete": nm = x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotide',id=nm, rettype = 'fasta', re...1134 days ago
Download genome using NCBI esearch command line !
...nload using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch...1099 days ago
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Tags
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies....Tags: fast, alignment-free, computation, whole-genome, Average, Nucleotide, Identity, ANI
2121 days ago
- DNA Nucleotide Counter is delivered in a DNA Baser package together with other free molecular biology tools. Download the package and double click it. The programs inside the package will be extracted to the destination folder (specified by you). Go to the destination folder and do...
Tags: DNA, Nucleotide, Counter, tools, scaf, chromatogram
2030 days ago
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Comments
Comment on "Tools for Sequence translation !"
.... EMBOSS Transeq: This is a command-line tool that can translate nucleotide sequences into amino acid seq...translation (i.e., convert a protein sequence into its corresponding nucleotide sequence). BioPython: Th...419 days ago
Comment on "Complete genome sequence of Wuhan seafood market pneumonia virus is out !"
CBI teams at GenBank®, the Sequence Read Archive (SRA), NCBI Virus, and BLAST continue to rapidly process and release data associated with this outbreak as it becomes...1550 days ago
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