Results for "Nucleotide"
Blogs
Computer simulation of genetic mechanism !!
...d-in-time population genetic simulations. http://www.patrickmeirmans.com/software/marlin.html Mason A package for the simulation of nucleotide data. http://www.seqan.de/pro...2967 days ago
Structural variation: the hidden genomic treasure
...unts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and shor...pipeline for annotation, classification and analysis of SVs at single nucleotide resolution.2010 PEMera compu...2695 days ago
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Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets...1138 days ago
- The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writ...
3408 days ago
- +40 more Bookmarks
Files
- Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
3858 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ly aligns TranscriptSimulator reads to their nucleotide templates using read title in...s “primer”, to recursively blast nucleotide databases in an attempt to ob...and a direct comparision of trace date with nucleotide data is possible. It also all...2678 days ago
Top-level pages
- ...pretation of various types of data including nucleotide and amino acid sequences, pro...dash;protein interactions; analysing single nucleotide polymorphisms to hunt for gen...n more detail on the structure level. Single Nucleotide Polymorphisms can be mapped o...
3939 days ago
List of bioinformatics open source projects/software.
...ary protein structure given assigned Residual Dipolar Coupling data SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Staden P...3749 days ago
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Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
...CSC, CSIRO, and the USDA as part of the International Sheep Genomics Consortium. It features over 54,241 evenly spaced probes that target single nucleotide polymorphisms (SNPs). More th...3889 days ago
- GenXPro GMbH is service provider for entire spectrum of nucleotide-based information of any biological sample. By combining intelligent data reduction techniques and late...
3628 days ago
- +6 more News
Opportunity posts
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
...iling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on the whole transcriptome level with a nucleotide precision. The technology all...3908 days ago
Postdoctoral Position (Bioinformatics/Computational Biology)
...iling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on the whole transcriptome level with a nucleotide precision. The technology all...3788 days ago
ResearchLabs posts
- Computer Aided Protein Structure Prediction; Identification of Vaccine Candidates (T-Epitope prediction); Analysis of Nucleotide/Protein Sequences; Development of Web Server/ Softwa...
3877 days ago
Bio-Scripts
Python script to download covid genome !
...if 'gene-region' in x and x['gene-region'] == "complete": nm = x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotide',id=nm, rettype = 'fasta', re...1128 days ago
Download genome using NCBI esearch command line !
...nload using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch...1093 days ago
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Comments
Comment on "Tools for Sequence translation !"
.... EMBOSS Transeq: This is a command-line tool that can translate nucleotide sequences into amino acid seq...translation (i.e., convert a protein sequence into its corresponding nucleotide sequence). BioPython: Th...413 days ago
Comment on "Complete genome sequence of Wuhan seafood market pneumonia virus is out !"
CBI teams at GenBank®, the Sequence Read Archive (SRA), NCBI Virus, and BLAST continue to rapidly process and release data associated with this outbreak as it becomes...1544 days ago
- +2 more Comments
