Results for "OS"
Bio-Scripts
Setting up falconUnzip conda environments for genome assembly !
...964 KB conda-forge python-edlib-1.2.3.post1 | py27h470a237_0...bioconda python-edlib: 1.2.3.post1-py27h470a237_0 bioconda...Research Use Only and not for use # # in diagnostic procedures, intended only...2005 days ago
Backward Elimination with Python
...h p-values and Adjusted R Squared: import statsmodels.formula.api as sm def backwardElimination(x, SL): numVars = len(x[0]) temp = np.zeros((50,6)).astype(int) for...1970 days ago
- ...ttps://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download Ubuntu / Debian sudo apt-get install ncbi-blast+ CentOS # download latest BLAST vers...
1777 days ago
Perl script to run in parellel !
...ystem ("augustus --species=caenorhabditis --outfile=$fn $seq --AUGUSTUS_CONFIG_PATH=/home/urbe/Tools/Alienomics_v1.1/augustus.2.5.5/config"); close FILE or die $!; } sub pa...1702 days ago
Samtools commands for bioinformatician !
...samtools view -q 42 -c sal_sej.bam ### sorting bam file by genome position samtools sort sal_sej.b.../path/to/coverage_results.txt ### note: returns count of depth at each position. input should be sorted...1618 days ago
Bash script to alignment of short reads against reference genome !
...bamba markdup SRR1770413.raw.sorted.bam SRR1770413.bam --- this marks reads which appear to be redundant PCR duplicates based on their read mapping position. It uses the same criter...1574 days ago
Bash commandline to install Anaconda !
...lling: zlib-1.2.11-h7b6447c_3 ... installing: blosc-1.15.0-hd408876_0 ... insta...ng: pycodestyle-2.5.0-py37_0 ... installing: pycosat-0.6.3-py37h14c3975_0 ... i...nstalling: networkx-2.2-py37_1 ... installing: nose-1.3.7-py37_2 ... installing...1570 days ago
Bash command to install Miniconda !
...0_1 - openssl==1.1.1d=h7b6447c_3 - pip==19.3.1=py37_0 - pycosat==0.6.3=py37h14c3975_0...6447c_3 pip pkgs/main/linux-64::pip-19.3.1-py37_0 pycosat pkgs/main/linux-...1570 days ago
- ...er.nvidia.com/cuda-downloads?target_os=Linux&target_arch=x86_64&targ...download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/cuda-ubuntu...download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/cuda-ubuntu....pin /etc/apt/preferences.d/cuda-repository-pin-600 $ wget http...
1568 days ago
- ...graceful-fs node-gyp node-hosted-git-info node-inflight nod...u bionic/universe amd64 node-hosted-git-info all 2.5.0-1 [6,75...tu bionic/universe amd64 node-osenv all 0.1.4-1 [4,212 B]...ously unselected package node-osenv. Preparing to unpack .../...
1568 days ago
