swgis v2.0 : a seqword genomic island sniffer
swgis v2.0 is the modified version of the seqword genomic island sniffer. this version is specifically optimized for predicting genomic islands in eukaryotic genomes. swgis v2.0 w...2015 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
...imental designs that may include replications, treatments, locations and times, can be accounted for in the linear mixed model (LMM). GWASpro is optimized to handle GWAS data that may...1979 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...racy improvements over the existing top performing aligners, including ClustalW, MAFFT, MUSCLE, ProbCons and Probalign. In addition, MSAProbs is optimized for shared-memory CPUs by emp...1764 days ago
Tadpole: an assembler, error-corrector, and read-extender
...complicated graph analysis or scaffolding, and therefore, is not particularly good for diploid organisms. Tadpole is very conservative and optimized for correctness rather than l...1554 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...on library for taxonomic-based annotation and quantification of bottom-up proteomics data. It is designed to be user-friendly, and has been optimized for speed and storage require...1512 days ago
DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
...ble of exact amplicon sequence variants (ASVs) present in each sample. The DADA2 Workflow on Big Data goes through workflow optimized to run on large datasets (10s...1274 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
...m. If you could not run it (which is usually caused by low version of libc++ or libz library) or you want to build a version optimized for your system, you can re-c...1181 days ago
Kmer: a suite of tools for DNA sequence analysis
...genomes (cross species). Sim4db: Spliced alignment of cDNA and genomic sequences, from the same (sim4) or related (sim4cc) species. Optimized for high-throughput batched a...994 days ago
964 days ago
OGDRAW - Draw Organelle Genome Maps
...input has to be a GenBank or EMBL/ENA flat file wherase the output can vary among several types of files. The application is optimized to create detailed high-quali...946 days ago