1574 days ago
HASLR: a tool for rapid genome assembly of long sequencing reads
...ing reads. HASLR is a hybrid tool which means it requires long reads generated by Third Generation Sequencing technologies (such as PacBio or Oxford Nanopore) together with Next Generatio...1557 days ago
1554 days ago
1550 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advanc...1547 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads against a draft...1449 days ago
RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
RNA-Bloom is a fast and memory-efficient de novo transcript sequence a...specific/agnostic) paired-end single-cell RNA-seq (strand-specific/agnostic) nanopore RNA-seq (PCR cDNA/direct cDNA...1397 days ago
251 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
...and reduced frameshift errors when applied to human and nonhuman assemblies built from Pacific Biosciences HiFi and continuous long reads or Oxford Nanopore reads, including the first co...763 days ago
670 days ago