Results for "PSI Blast"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is...sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST results and some formulas, a...2604 days ago
Basic command-line to run BLAST
The goal of this tutorial...programming language and NCBI BLAST+. Get Data Grab some da...> cow.small.faa BLAST Now we can blast these two c...-version] Now we can run the blast job. We will use blastp, whic...RIPTION Nucleotide-Nucleotide BLAST 2.7.0+...2239 days ago
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Bookmarks
A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest...you will see how to look efficiently for a particular protein sequence, how to blast it against the database of yo...3631 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in f...of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses...2919 days ago
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Pages
- I found several useful bioinformatics articles which exaplain, define and elaborate...tary Sequence Analysis - Database Searching by B. Golding Jan 1996. Fasta, blast, blitz, blaze, flash, blocks....
3915 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short se...mic sequencing data for alignment, assembly, and/or BLAST identification. BugBuilder &...large genomes in the clouds BEAP 0.6 beta – Blast Extension and Assembly Progra...2680 days ago
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Top-level pages
- ...e searches have become readily available through the introduction of PsiBLAST [3]; studying evolutionary...TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI–BLAST: a new generation o...
3942 days ago
Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page p...arson talks about Protein Evolution Biological Sequences and Information BLAST HELP MANUAL BLAST tutorial Pedestrian guide to...3125 days ago
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Wire posts
News
- How to operate blast via shell ? Is any one please tell me how .sh file operate a blast query in blast database
3915 days ago
- In current era, we are handling huge amoun...Large-scale sequence studies requiring BLAST-based analysis produce huge a...f data to be parsed. There are several BLAST parsers are available, but th...develope a new and fast fast package "BlaSTorage" to parse and store BLAS...
3884 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hin...movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jaye...n. Algo Banya Apne. MOTIF mil gaya. BLASTana FASTAna. Hamari Sequence...3913 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just gen...nome make very fast, very accurate mistakes. Let's BLAST it. Some genome never has tr...develops random features. Go watch CINEMA and have BLAST.3715 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3903 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at t...3891 days ago
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Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation Fir...wnload ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...stead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...1141 days ago
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai...c License. # This script will parse a NCBI blastx output file and output the top N hits of each blast search result. # For each hi...Hits,$outfile) = @ARGV; print "Parsing the BLAST result ..."; my $in = Bio::S...2909 days ago
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