Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is...sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST results and some formulas, a...2604 days ago
Basic command-line to run BLAST
The goal of this tutorial...programming language and NCBI BLAST+. Get Data Grab some da...> cow.small.faa BLAST Now we can blast these two c...-version] Now we can run the blast job. We will use blastp, whic...RIPTION Nucleotide-Nucleotide BLAST 2.7.0+...2238 days ago
A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest...you will see how to look efficiently for a particular protein sequence, how to blast it against the database of yo...3631 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in f...of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses...2919 days ago
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Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short se...mic sequencing data for alignment, assembly, and/or BLAST identification. BugBuilder &...large genomes in the clouds BEAP 0.6 beta – Blast Extension and Assembly Progra...2680 days ago
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Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page p...arson talks about Protein Evolution Biological Sequences and Information BLAST HELP MANUAL BLAST tutorial Pedestrian guide to...3124 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hin...movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jaye...n. Algo Banya Apne. MOTIF mil gaya. BLASTana FASTAna. Hamari Sequence...3913 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just gen...nome make very fast, very accurate mistakes. Let's BLAST it. Some genome never has tr...develops random features. Go watch CINEMA and have BLAST.3714 days ago
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Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at t...3891 days ago
Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation Fir...wnload ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...stead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...1141 days ago
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai...c License. # This script will parse a NCBI blastx output file and output the top N hits of each blast search result. # For each hi...Hits,$outfile) = @ARGV; print "Parsing the BLAST result ..."; my $in = Bio::S...2908 days ago