Results for "PU"
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Comment on "Benchmarking Perl Module !"
...for 100 iterations: timethese(100, { 'MyModule' => \&benchmark_my_module, }); Analyze the results: The timethese function will output the results of the benchmark...408 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular software tool for short-re...g SPAdes is usually as follows: spades.py -o output_directory -1 forward_reads.f...for an iterative assembly approach where the output from the previous assembly i...408 days ago
- ...ad simulators that are widely used in bioinformatics research. Here are some of them: ART: The ART (short for Artificial Read Simulator) is a popular tool for generating synthe...
408 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assemb...nd Windows operating systems. Prepare the input data: The input data should...rminal and navigate to the directory where the input data is stored. Then, enter...413 days ago
Comment on "Tools for Sequence translation !"
...SeqKit: This is a command-line tool that can perform several sequence manipulations, including sequence tr...of tool depends on the specific requirements of the user, including the input format, the genetic code use...413 days ago
Comment on "Tools for Differential expression analysis"
...ralized linear model to model the count data and provides methods for estimating dispersion and testing for differential expression. limma: A popular R package that is used for...413 days ago
Comment on "Tools for RNA classification"
...ols available for RNA classification, each with its own strengths and limitations. Here are some commonly used tools: Infernal: Infernal is a popular tool for RNA classificatio...413 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...n their evolutionary relationship or biological interest. Obtain the genome sequences: Download the genome sequences of the selected species from a public database, such as NCBI or...416 days ago
Comment on "Elgg Installation steps !"
If you need to uninstall all MySQL packages sudo apt-get remove --purge mysql* sudo apt-get autoremove sudo apt-get autoclean418 days ago
- CheckM for Metagenome https://linsalrob.github.io/ComputationalGenomicsManual/CheckM/
628 days ago
