Computer simulation of genetic mechanism !!
...program that simulates highly divergent DNA sequences and protein superfamilies http://bioinfolab.unl.edu/~cstrope/isg/ Indelible A powerful and flexible simulator of bio...3121 days ago
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Which are the best statistical programming languages to study for a bioinformatician?
...cing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of powerful tools and was easy to use, wh...4098 days ago
Bio++ : C Language libraries for your biological need
...implemented in C, and it is both efficient and portable. C has always appealed to systems programmers who like the terse, concise manner in which powerful expressions can be coded. C w...4094 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...nformatics. Taylor, BMC Bioinformatics 11(Suppl 12):S1, 2010 Full Text Links to Linux command-line tutorials and resources Tutorials for AWK, a powerful tool for handling data tables...3926 days ago
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Computational Biologist Scientist @ Strand Life Sciences
...an algorithmic and computational approach. Strand’s solutions for life sciences research are robust and easy to use by the most novice user while powerful and configurable for the bioi...3851 days ago
Protein function annotation and machine learning - UPMC - Paris, France
...s to reduce the space of models and the search complexity, and we shall implement some important algorithmic changes towards the realization of a powerful integrated annotation tool....3710 days ago
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RGFA: powerful and convenient handling of assembly graphs
RGFA, an implementation of the proposed GFA specification in Ruby. It allows the user to conveniently parse, edit and write GFA files. Complex operations such as the separation of the implicit instances of repeats and the merging of linear paths can be performed. A typical application of RGFA is ...Tags: RGFA, powerful, convenient, handling, assembly, graphs, GFA
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RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comprehensive information of the simulation. It can simulate single-enzyme digestion, double-enzyme digestion and size selection process. It can also analyze multiple genomes at one run and generates concise comparison of ...Tags: RestrictionDigest, powerful, Perl, module, simulating, genomic, restriction, digests
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Comment on "Basic command-line to run BLAST"
...e information about the sequences that matched the query sequence, including the alignment score, identity, and e-value. Overall, BLAST is a powerful tool for searching sequence d...569 days ago
Comment on "AutoDock Vina: an open-source program for doing molecular docking."
QVina-W, a new docking tool particularly useful for wide search space, especially for blind docking. QVina-W utilizes the powerful scoring function of AutoDock Vina, the accelerated search of QVina 2, and adds thorough search for wide search space. https://qvina.github.io/1568 days ago