3877 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
...ilar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with tho...1235 days ago
3669 days ago
YASS :: genomic similarity search tool
...for low complexity repeats reporting of various alignment statistical parameters (mutation bias along triplets, transition/transversion) post-processing step to group gapped alignmen...2941 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...served order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does not require any pre-processing, such as repeat masking, sinc...2930 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines fo...2923 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! D...2921 days ago
Linux command line exercises for NGS data processing
...ry, change directory (cd) to the linuxTutorial folder, and do all the processing inside: [uzi@quince-srv2 ~/]...it easier to understand advanced tutorials such as Illumina Amplicons Processing Workflow. In Linux, we use a...2890 days ago
2814 days ago
2643 days ago