Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing. Each consumable flow cell can now generate 10–20 Gb of DNA sequence data. Ul...2335 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. Code: $ mapP...2285 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstrat...Grab some cow and human RefSeq proteins: wget ftp://ftp.ncbi.ni...efseq/B_taurus/mRNA_Prot/cow.1.protein.faa.gz wget ftp://ftp.ncbi.n...ne? grep -c '^>' cow.1.protein.faa grep...astp, which is appropriate for protein to...2258 days ago
Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources Bii.a-star.edu.sg Bio resea...s. These include animated tutorials on topicssuch as BLAST, finding mutations in a protein, a...2207 days ago
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List of motif discovery tools !
...iscovery: 2Dsweep -- protein annotation by secondary structure ele...ucture Search for functional annotation of important sites in protein...discovery of long patterns in protein sequences Discover long pattern...mation about protein sequence annotations. PAR-3D -- Protein Acti...2007 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping, but may not include dir...1851 days ago
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Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBa...perimental) and >1500 non-redundant protein entries http://www.drugbank.c...data of 890 drugs and 394 target human proteins http://ww...l.com/1471-2105/8/353/additional/ [25] Protein li...1448 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 2025. Here are the top 10 NGS services companies to look for – 1. ...1273 days ago