Results for "Python Training"
Bio-Scripts
(JitMetaENV) ➜ wgd git:(master) pip install --user ERROR: You mu....5.2 in /home/urbe/.local/lib/python3.6/site-packages (from bokeh=...011k in /home/urbe/.local/lib/python3.6/site-packages (from pandas...e-any.whl (25 kB) Collecting python-utils>=2.3.0 Downloading p...1208 days ago
- #GffRead: GFF/GTF utility providing format conversions, filtering, FASTA sequence extraction and more. https://git...tructures_post_PASA_updates.19157.gff3 #There are also another good option python g...
1204 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it...e/urbe/anaconda3/envs/wgd/lib/python3.7/site-packages (from wgd==1...0.1 MB 29 kB/s Collecting biopython>=1.75 Using cached biopyth...e-any.whl (67 kB) Collecting python-dateutil>=2.1 Using cached...1204 days ago
Command to create conda environment !
# using pip pip install -r requirements.txt # using Conda conda create --name --file requirements.txt #Using yaml conda env create -f environment.yml #Listing env conda env list #Create env with python36 conda create -n myenv python=3.61201 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1055 days ago
Print in terminal with python !
#!/usr/bin/env python import time import curses def pbar(window): height, width = window.getmaxyx() for i in range(10): window.addstr(height -1, 0, "[" + ("=" * i) + ">" + (" " * (10 - i )) + "]") window.refresh() time.sleep(0.5) curses.wrapper(pbar)979 days ago
Python script to read FASTA and FASTQ file !
# !/usr/bin/env python3 # -*- coding: utf-8 -*- from pysam import FastxFile def read_fasta_q_file(fasta_q_file): """Parse FASTA/Q file using `pysam.F...977 days ago
- #Create a conda environment. #Install a Python package in the terminal using conda...-n myenv $ conda create -n myenv Python=3.7 $ conda env create -f...e $ conda activate earth-analytics-python $ conda env update -f enviro...- matplotlib # Core scientific python...
962 days ago
Installing Covid19 Environment !
(base) vikas@vikas-Lenovo-ideapad-320-15ISK:~/vinodLab/Genepi$ conda env c...######################### | 100% gitpython-3.1.24 | 122 KB | ####...############################ | 100% python_abi-3.7 | 4 KB | #...############################ | 100% python-d...924 days ago
- (abhiENV) [abhi@hn1 output_OM824]$ conda create -n mgsc python=3.6 graphviz numpy Collecting package metadat...ted specs: - graphviz - numpy - python=3.6 The following packag...kgs/main/linux-64::pixman-0.40.0-h7f8727e_1 python...
825 days ago
