RNA-seq Analysis Workshop Course Materials
...endent and difficult to do well. In this lesson we will focus on the Reference genome-based type of RNA seq. http://chagall.med.cornell.edu/RNASEQcourse/2145 days ago
AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
...patible xhtml to visualize/share/store/extract analysis results. https://f1000research.com/articles/6-100/ https://github.com/jason-weirather/AlignQC2110 days ago
1795 days ago
iSeqQC: a tool for expression-based quality control in RNA sequencing
iSeqQC, an expression-based QC tool that detects outliers either produced due t...to dissimilarity within a phenotypic group. iSeqQC implements various statistica...outliers. http://cancerwebpa.jefferson.edu/iSeqQC/ https://bmcbioinformatics.b...1552 days ago
BlobToolKit: A toolkit for genome assembly QC
Filtering raw genomic datasets is essential to avoid chimeric assemblies and to increase the validity of sequence-based biological inference. BlobToolKit extends the...1547 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...Celera SHARCGS Allpaths IDBA TAIPAN Edena SOAPdenovo Maq IDBA-UD No. of Reads present in the Ref. Seq. ART NGS Reads Simulator HiTEC, FASTQC Minimum Description Length...1460 days ago
1284 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...flows for new technologies and protocols. Process feature barcoding data such as CITE-seq, REAP-seq, MULTI-seq, Clicktags, and Perturb-seq. Obtain QC reports from single-cell RNA-...1138 days ago
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
The GenomeQC web application is implemented in R/Shiny version 1...n 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the...ource code and a containerized version of the GenomeQC pipeline is available in the...729 days ago