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3953 days ago
Five unique traits of effective computational biologist
...and effective biological programmer, you need to possess a co...ome of the bad biological programmers only learn new technical...countered with biological programmer who call themself a hard-...te a lot of time going down a rabbit hole and possibly never g...3951 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencie...ules will be dependent on several other modules. Just imagine...gumentsResolving DependenciesTransaction Summary==============...n, you should set some configuration parameters as shown below...3951 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3950 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3946 days ago
3953 days ago
Regular Expression Cheat Sheet
...heet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick reference guide for regular expressions, including symbols, ranges, grouping, assertions and...3953 days ago
Which are the best statistical programming languages to study for a bioinformatician?
...olic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matla...a lot of powerful tools and was easy to use, whereas SPSS is for non-programmers and R need programming s...3952 days ago
3945 days ago
Bio++ : C Language libraries for your biological need
...anguage, yet sufficiently abstract and fluent to describe algo...ble to convert from C to C++ gradually, thus making use of C++...the unique features of the libraries are as follows:Sequence a...es implementation.Linear algebra: eigen decomposition, LU deco...3948 days ago
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3952 days ago
Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, attendees should be able to write simple Perl programs and to understand more comp...3952 days ago
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3945 days ago
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...ional biology and bioinformatics techniques. We seek to accurately predict links, such as specific molecular interactions, in eukaryotic cell sig...sis software. Predicting biologically relevant protein interactions Cellular network evolu...3948 days ago
3920 days ago
Bioinformatician become producer/director !!!
...ne BLAST kiya. NCBI wale Data le jayenge Raju ban gaya Genefinder. Har L...nd jo dock karega. Alignment to hona hi tha. Mera sequence mera base. Markov a...o Database Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke...3919 days ago
Perl Poem: Parse it in both Perl and English!
...r on Perl poetry that she presented at the Usenix Winter 1992 Technical Conference, entitled "Camels and Needles: Computer Poetry Meets the Perl Programming Language". (The paper is...3919 days ago
Influenza animation - flu virus mechanism
...l Direction, Design & Animation: Daniel Lim, 2Preform Music & Sound Design: Javier Barrero, Logical Disorder Production Company: David Hager, All Terrain Media3853 days ago
Bioinformatics Algorithms (Part 1) with Pavel Pevzner, Phillip E. C. Compeau,
The course Bioinformatics Algorithms (Part 1) by Pavel Pevzner, Phillip E. C. Compeau, and Nikolay Vyahhi from University of California, San Diego will be offered free of charge to everyone on the Coursera platform. Sign up at http://www.coursera.org/course/bioinformatics.3870 days ago
Install BLAST in Ubuntu/Linux and Window !
...nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the defaults, it should put BLAST under C:\Program Files\NCBI\blast-2.7.1+1147 days ago
2917 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically wan...3531 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3527 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialis...oinformatics. Briefly, the overall aim of the project which I...nformatics-supported genome, transcriptome, proteome, and meta...y using this technique I integrated six different protein-prot...first learn at least one programing language and investigate...2363 days ago
3953 days ago
3953 days ago
Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp398 days ago
Comment on "Benchmarking Perl Module !"
...ite benchmark code: Write a simple benchmark program that exercises the functionality of your Perl module. This program should take the form of a su...methese function to run the benchmark for 100 iterations: timethese(100, { 'My...416 days ago