Results for "RNA structure"
Bio-Scripts
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DN...2914 days ago
Perl script introduces control structures, arrays and hashes.
#!/usr/bin/env perl use strict; use warnings; my @first_array = ('DNA', 'ATGCGTGC', 5, 'RNA', 'AUGC'); print $first_arra...for (my $i=0; $i 'ATCGATGCT', 'RNA' => '...2859 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2522 days ago
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR ;...2296 days ago
Biological Sequence handling with Perl !
package Sequence::Generic; # File: Sequence/Generic.pm use strict; use Carp; us...$self->{'type'} = $type || ($sequence=~/u/i ? 'RNA' : 'DNA'); } return $se...$self->{'data'}; return $seq unless $self->is_RNA;...2178 days ago
- ...'/media/urbe/MyPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBG...CMD: /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/util/..//ut...touch /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...ir -p /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...ir -p /home/urbe/Tools/trinityrnaseq-Tr...
2124 days ago
- # list sample names & download URLs. sample_links = {"ERR458493": "https://osf.io/5d...ow SAMPLES=sample_links.keys() # download yeast rna-seq data from Schurch et al,...dy rule download_all: input: expand("rnaseq/ra...
1513 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadinsti...ava.io.tmpdir= option to select an alternate temp location. USAGE:...(BETA Tool) Collects reference and alternate allele counts at specified...tigAlignmentsSAMSpark (BETA Tool) (Internal) Exa...
2072 days ago
- #http://www.nupack.org/downloads/source...s.c pfuncUtils.c: In function ‘PrintStructure’: pfuncUtils.c:950:7: warnin...-Wunused-result] scanf("%s", structure); ^~~~~~~~~~~~~~~~~~~...design_engine.c: In function ‘parseStructure’: design_engine.c:1257:2: wa...
2023 days ago
Pack a perl program with their dependencies on Ubuntu !
...BOL Log in Username or email Password...Log in Username or email Password...alGeneCo-transferBacteriaAssociationsPopulationStructure github.com - GeneMate...1508 days ago
