Results for "RefSeq"
Blogs
Basic command-line to run BLAST
...alls the Python programming language and NCBI BLAST+. Get Data Grab some data to play with. Grab some cow and human RefSeq proteins: wget ftp://ftp.ncbi.nih.gov/refseq/B_taurus/mRNA_Prot/cow.1.prot...2245 days ago
List of comparative genomics resources !
...ween mouse and human gene orthologs Use comparative genomics approach to characterize gene models and identify putative cis-regulatory regions of RefSeq Gene Orthologs. IKMC --...678 days ago
- +1 more Blogs
Bookmarks
- ...to a reference database containing microbial and viral protein sequences. By default, Kaiju uses either the available complete genomes from NCBI RefSeq or the microbial subset of th...
2870 days ago
- ...tions. These annotations can be a combination of both exon predictions (e.g. Genscan) and annotations that have been experimentally verified (e.g. RefSeq). Ideally, we would like to h...
2646 days ago
- +3 more Bookmarks
Top-level pages
List of bioinformatics open source projects/software.
...ics platform and graph based database built around most data available in UniProt KB(Swiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,100), RefSeq, NCBI taxonomy, and Expasy En...3757 days ago
Commercial and public next-gen-seq (NGS) software
...SAM) SXOligoSearch - SXOligoSearch is a commercial platform offered by the Malaysian based Synamatix. Will align Illumina reads against a range of Refseq RNA or NCBI genome builds for...3520 days ago
- +3 more Top-level pages
Wire posts
News
- ...set of genome assemblies of interest. Then, just open the “Download assemblies” menu, choose the source database (GenBank or RefSeq), choose the file type, and s...
2548 days ago
BLAST nr version 5 database, (nr_v5)
...bi.nlm.nih.gov/blast/temp/cleanup-blastdb-volumes.py Here are the new rules on how we keep titles in nr_v5: 1. We keep all refseq, swissprot, pir and PDB title...1718 days ago
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Bio-Scripts
Download the genome from NCBI using bash script/command
...ungi curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary.txt' |...ant curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary.txt' |...ozoa curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/protozoa/assembly_summary.txt...2533 days ago
Download the gff files from NCBI using bash script/command
...ungi curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary.txt' |...ant curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary.txt' |...ozoa curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/protozoa/assembly_summary.txt...2524 days ago
- +8 more Bio-Scripts
Tags
A script to convert Ensembl, Unigene, Uniprot and RefSeq IDs to Symbol IDs
Hello, I am looking for a program/function that converts different sources of IDs to Symbol IDs. The script in R will be an added advantage ... ThanksTags: Ensembl, Unigene, Uniprot, RefSeq, IDs, Symbol IDs Convert, R
3557 days ago
Comments
Comment on "Basic command-line to run BLAST"
...a file for local searches. Choose the database: BLAST searches can be performed against many different databases, including the NCBI GenBank, RefSeq, and non-redundant databases....424 days ago
