661 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...s a bioinformatics programmer, and crunchy data analyser you need to...2.36Build the perl module: Build by running Makefile.PL, remember the...rescue. Dont worry biological data cruncher, this is true we are now...settings.# cpanSorry, we have to rerun the configuration dialog for...3951 days ago
Five points for bioinformatics software/tools
...ical programmers who believe in open sharing of knowledge. They come under Open Bioinformatics Foundation or O|B|F which is a non-profit, volunteer run organization focused on suppo...3708 days ago
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Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3868 days ago
Keep Your Important SSH Session Running when You Disconnect from Server !!!
...tion, analysis, comparative study we do need to run exhaustive programs, which mi...ll allow you to keep multiple terminal sessions running and easily switch between...mal prompt.To disconnect (but leave the session running)Hit Ctrl + A and then Ctr...3704 days ago
Monitor running jobs on Linux server
...ou sometime need to check the running programs and want to monitor the running programs as well. The "to...;top’ is very simple to run: type%% topYou’ll get a...e load on the machine. If you run something for a long time, yo...inally! What’s actually running! The two most important n...3621 days ago
List of In-silico Binding Site Prediction Tools
...equence or a protein structure. If a sequence is submitted then Phyre is run to predict the structure. The...cavities in a given protein. DEPTH: http://mspc.bii.a-star.edu.sg/tankp/run_depth.html Depth measures the...3745 days ago
Linux for bioinformatician !!!
...an ease. The field of bioinformatics relies heavily on Linux-based computers and software. Although most bioinformatics programs can be compiled to run. If you don’t know what...3706 days ago
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Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at...3897 days ago
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Install BLAST in Ubuntu/Linux and Window !
.... #If that FTP links does not work, try HTTP instead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the de...1147 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...rmatician must have a strong biological background in his/her research area which will allow them to understand if anything went wrong during their run by only looking at the result...2363 days ago
Comment on "Benchmarking Perl Module !"
...ogram should take the form of a subroutine that runs the code you want to benchma...my $result = MyModule::my_function(); } Run the benchmark: Call the timet...that exercises the functionality of the module, running the benchmark using the t...416 days ago
Comment on "Short-read assembly using Spades !"
...Ades: Quality control of raw reads: Before running the assembly, it is impor...rious tools such as Trimmomatic or FastQC. Running SPAdes: After quality con...ASTQ format. Evaluation of assembly: After running SPAdes, the next step is...416 days ago