FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the followin...2085 days ago
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Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
...Deepbinner by itself). To minimise the number of misclassified reads (use Deepbinner in conjunction with Albacore demultiplexing). You plan on running signal-level downstream analy...1986 days ago
Genome Annotation using MAKER tutorial !
...using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were qu...1962 days ago
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
...fficiently, and some are only available for certain operating systems. Furthermore, the complicated installation process of required packages and running environments can render these...1932 days ago
BlobToolKit: A toolkit for genome assembly QC
...Viewer. The BlobToolKit Pipeline is a configurable Snakemake pipeline that automates all steps from retrieving public datasets through running analyses and generating a Blo...1535 days ago
parallelLastz: Lastz with multi-threads support.
Running Lastz (https://github.com/lastz/lastz) in parallel mode. This program is for single computer with multiple core processors. When the query file format is fasta...1352 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
...ion of a soon-to-be published paper in Methods in Molecular Biology. Please see that paper for many more details and practical considerations for running homologizer analyse...336 days ago