589 days ago
Five points for bioinformatics software/tools
...and cons of both kind of software/tools and try to assist (Hmmm not...s. The best part about open source tools/software is that they’...cian says “if you can do the same thing with commercial softwar...entirely wrong. Using proprietary tools does not absolve you of the...3706 days ago
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignm...erformance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking. We f...1145 days ago
Bioinformatics approach to Boar Taint
...oar taint levels. Resequencing of a total of 47 samples belong to Norwegian Landr...rage coverage. Short reads generated from these samples mapped to Sus Scrofa...7 with the aid of FreeBayes , a variant caller tool. A final list of SNPs was pre...3788 days ago
Statistics Using R with Biological Examples
This book is a manifestation of my desire to teach resea...se covers and to introduce the utilization of R as a tool for analyzing their data. My...ate the great potential statistics has to offer as a tool to answer biological question...2529 days ago
Genome Assembly Tools and Software - PART2 !!
...open-source, freely available tool that automatically downloads,...burdens of data preparation. SAMMate 2.7.4 / assemblySAM 1.1 &n...e EstimationConPADE is a tool used to estimate contig ploid...using either a model-based or sampling-based simulation. SIS &n...2685 days ago
Awesome perl frameworks, libraries and software - PART 2
...kensanata/hex-mapping - Tools to work with hex maps for ro...te any executable file in the same way CGI does, the second one...into C code chrisa/perl-Net-SAML2 - Perl Net::SAML2 modul...Perl application programming toolkit abh/colobus - Perl N...2493 days ago
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BEReX : Biomedical Entity-Relation eXplorer
BEReX is a new biomedical knowledge integration, search, and exploration tool. BEReX integrates eight popular data...3839 days ago
Update Genome Workbench 2.7.15 released
NCBI Genome Workbench is an integrated app...ome Workbench is built on the NCBI C++ ToolKit and uses cross-platform AP...at NCBI and makes use of the NCBI C++ ToolKit. The C++ ToolKit provides...of plain GI numbers Mac OS: improved tooltips for toolbar buttons Phyl...3720 days ago
"Advances in Molecular Dynamics of Biomolecules" December 3-4, 2013 @ JNU
The extensive growth of computational power and resources over the last two decades...he molecular level. Molecular Dynamics (MD) simulations have been an invaluable tool in elucidating the structural...3876 days ago
Research Assistant @ NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES
NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES Near Basant Vihar G.T. Road Bypass P....sponsibilities: To help the PI for Beta testing and development of the SanGenix Tool for NGS data. Essential Qu...3805 days ago
3245 days ago
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like t...ne Tumhare Paas Hai Aao Database Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Me...3917 days ago
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Palindrome Simulation commands !
...lindromeSimulated.fa 3319 ~/Tools/art_bin_MountRainier/art_illumina -ss MSv3 -sam -i allPalindromeSimulated.fa...-s 10 -o paired_dat 3320 ~/Tools/art_bin_MountRainier/art_illumina -ss MSv3 -sam -i allPalindromeSimulated.fa -...PE.fasta 3326 cd masurca; ~/Tools/MaSuRCA-3.2.3/bin/masurca si...1734 days ago
Bash script to convert SAM to BAM visualization ready
samtools view -bS file.sam | samtools sort - file_sorted samtools index test_sorted.bam test_sorted.bai2182 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...lem and by using bioinformatics tools this can be easily achieved...ymph node metastasis, and blood samples taken from the same patient and the reflection of...is, it provides lots of useful tools for comprehensive analysis a...ny will be developing effective tools to eliminate manipulated dat...2361 days ago
2309 days ago
Comment on "Sibelia: A comparative genomics tool"
...numbers of sequences (in the same order as they apper in the i...eny block. Copies having the same number in the "tag" field (l..."stripes" consisting of the same synteny blocks. For example,...eration and Genome Comparison Tool" (poster), WABI 2012 http://...1284 days ago
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