Tools to detect synteny blocks regions among multiple genomes
...visualize and interrogate comparisons among multiple complete genome sequences. http://syntenyminer.sourcefo...nalyze synteny, homologous genes and other conserved elements between sequences. This software is useful in s...2621 days ago
Computer simulation of genetic mechanism !!
...program to simulate the evolution of protein sequences under the constraints of the...to simulate the evolution of recombinant DNA sequences in continuous time http://sci...program that simulates highly divergent DNA sequences and protein superfamilies htt...2986 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3956 days ago
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Master Thesis: Trans-membrane topology prediction through Markov based decoders
...f the TM domains. Results: In a cross validated test on single sequences, our trans-membrane MM, correctly predicts the entire topology for 77% of the sequences in a standard dataset of 86 p...3956 days ago
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Bio++ : C Language libraries for your biological need
...(sequence only).Sequence manipulation: truncation, concatenation, sub-sequences, etc.In silico molecular biol...tance (Miyata and Grantham) + import from any AAIndex entry.Consensus sequences.Pairwise alignment.Similarity...3959 days ago
Introduction to Bioinformatics
...net Resources Computational Molecular Biology Course Course on Bioinformatics EMBNet Biocomputing Tutorials Finding the genes in the genomic sequences The Genetic Programming Tuto...3932 days ago
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100K Foodborne Pathogen Genome Project
...tion’s Center for Food Safety and Applied Nutrition, and Agilent Technologies, today announced that it has added 20 newly completed genome sequences of foodborne disease-causing...3934 days ago
Webinar: Wednesday 21 August 2013 at Noon EDT
This webinar will describe the use of combinatorial pooling to reconstruct gene sequences within BACs. Recent work in barley has shown that this level of sequence knowledge is sufficie...3931 days ago
Livestock Functional Genomics Summer School (LFG 2013)
...pant should understand the basis and the context of livestock big molecular data, and be able to manipulate high density genotypes, whole genome sequences and transcriptome data. Th...3940 days ago
Postdoc Position in Computational Biology
...RNA-DNA interactions. Applicants should hold a M.Sc . or PhD in Computer Science or related areas. Experience in the analysis of biological sequences, gene expression and gene re...3716 days ago
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Bioinformatics -- Understanding of living systems through information science
...progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a research f...mparison system developed by the Sakakibara Lab calculates homologous sequences called anchors, which are con...3928 days ago
Python script to download covid genome !
.../usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ ha...ests.get("https://www.ncbi.nlm.nih.gov/core/assets/genbank/files/ncov-sequences.yaml").text) seqs = seqs['ge...1147 days ago
Download genome using NCBI esearch command line !
...NI for alignment free comparision #conda install -c bioconda fastani fastANI -q seq1.fa -r seq2.fa --visualize -o fastani.out #Plot using sequences Rscript plotSeq.R seq1.fa se...1112 days ago
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Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome. These sequences are often used as genetic markers and are important in many areas of genetics and genomics research. Here are some methods for discovering tandem repeats in genomes: T...Tags: Tandem, repeats, DNA, sequences, find, methods
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Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that read the same backward as forward. They can be present in genomes and have various biological functions. Here are some methods for discovering palindromes in genomes: Direct sequence search: One of the simplest ways to discove...Tags: Palindromes, sequences, nucleotides, reads, backward, forward, methods, steps
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Comment on "Tools for Sequence translation !"
...everal genetic codes and can handle multiple sequences at once. EMBOSS Transeq:...mand-line tool that can translate nucleotide sequences into amino acid sequences. It...everal genetic codes and can handle multiple sequences at once. CLC Sequence Vi...432 days ago
Comment on "Tools for RNA classification"
...seful for identifying non-coding RNA (ncRNA) sequences. Rfam: Rfam is a databas...ctor machine (SVM) algorithm to classify RNA sequences. It is particularly useful fo...ieve the best possible classification of RNA sequences....432 days ago