What are the best software options available for nanopore (ONT) reads ?
Tags: ONT, Nanopore, Assembly, Sequencing, Reads, fast
2189 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome size and great biotechnological importance, the budding yeast, Saccharomyces cerevisiae, has many i...Tags: LRSDAY, Long-read, Sequencing, Data, Analysis, Yeasts
1710 days ago
vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vtTags: vt, variant, tool, discovers, short, variants, Next, Generation, Sequencing, data
1556 days ago
Scientist Bioinformatics Positions
Bioinformatics-Multi_Omics_Integration https://www.researchgate.net/job/939073_Senior_Scientist_Bioinformatics-Multi_Omics_Integration Senior_Scientist_Bioinformatics-Transcriptomics_Analysis https://www.researchgate.net/job/939075_Senior_Scientist_Bioinformatics-Transcriptomics_...Tags: Sequencing, NGS, Machine Learning, Pytorch, TensorFlow, SQL, R
1554 days ago
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Described by Firtina et al. (preliminary version at https://arxiv.org/pdf/1902.04341.pdf More at&...Tags: Apollo, Sequencing, Technology, Independent, Scalable, Accurate, Assembly, Polishing, Algorithm
1508 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.Commonly used biological software and example script files for different assembly p...Tags: Genobuntu, Package, Next, Generation, Sequencing, Genome, Assembly
1444 days ago
How HiFi Reads Different from Traditional PacBio Long Reads ?
Trying to understand HiFi reads, any link could help ...Tags: HiFi, PacBio, Reads, Third, Generation, Sequencing
1223 days ago
Choosing the Right NGS Sequencing Instrument for Your Study
The right sequencing instrument for your study depends on your project goal. Setting aside turnaround time and price, it essentially comes down to the numbers of reads and read length you need for your experiment. Below, we've described and compared metrics for each of the instruments available. ...Tags: Choose, NGS, Sequencing, Instrument, Study
687 days ago
FiNGS: Filters for Next Generation Sequencing
Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their thresholds) Option to use filters identical to I...Tags: Filters, Next, Generation, Sequencing, FiNGS, NGS
1160 days ago