Results for "Similarity"
Blogs
List of gene ontology software and tools
...redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, interacti...lab GOssTo GOssTo and GOssToWeb are tools to calculate the semantic similarity between genes or terms in the...3702 days ago
New Machine Learning Packages in R
...ng, Study-Specific Ensembling (Trained-on-Observed-Studies Ensemble), the Study Strap, and the Covariate-Matched Study Strap. and offers over 20 similarity measures. See Kishida, e...1492 days ago
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Bookmarks
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text form...TERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds to detect potential similarity regions, and then tries to ex...2917 days ago
- ...as recipients. The breadth of the database allows not only query sequences, but also their database match partners to be evaluated for sequence similarity or novelty compared to taxono...
2866 days ago
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Pages
Bio++ : C Language libraries for your biological need
...me, polarity and charge + physico-chemical distance (Miyata and Grantham) + import from any AAIndex entry.Consensus sequences.Pairwise alignment.Similarity score computation.Sequence bo...3940 days ago
Top-level pages
- ...PSI–BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389–3402Pearson WR (2000) Flexible sequence similarity searching with the FASTA3 pro...
3940 days ago
Useful Links for Bioinformaticians
...lossary The Gene-School Glossary Glossary of Genetic Terms Similarity Search Tutorials An Overvi...ormation Visualization of Multivariate Data from Biological Sequence Similarity Searches Feel free to add...3123 days ago
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Wire posts
News
Complete genome sequence of Wuhan seafood market pneumonia virus is out !
...enome sequences from affected individuals are very very close to each other. Several are identical and none has more than 5 differences (99.983% similarity). This strongly suggests that...1549 days ago
ResearchLabs posts
- ...ins with very similar amino acid sequence are "no-brainers", but the real test, which our group largely focuses on, is to detect the "essential" similarity in proteins whose non-critica...
3877 days ago
Bio-Scripts
Blast result parser with Perl and Bioperl
...the hit sequence in the alignment print OUT $hsp->start('hit') . "\t" . $hsp->end('hit') . "\t"; # get the similarity value printf OUT "%.1f"...2907 days ago
Tags
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to ...
Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity
2686 days ago
- pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based mode) synteny to the genome of some related species (reference-based mode) Scaffolding In reference-based mode, pyS...
Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity, Scaffolding
2686 days ago
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Comments
Comment on "Basic command-line to run BLAST"
...e database. It then expands the matches to identify longer regions of similarity, called "alignments," and calculates a score for each alignment that reflects its degree of similarity. BLAST is widely used in bio...413 days ago
- ➜ mashmap-Linux64-v2.0 git:(master) ✗ ./mashmap -h-----------------Mashmap is an approximate long read or contig mapper based on Jaccardsimilarity-----------------Example usage:$ mashma...
2115 days ago
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